| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,025,461 – 18,025,561 |
| Length | 100 |
| Max. P | 0.923144 |
| Location | 18,025,461 – 18,025,561 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 81.89 |
| Mean single sequence MFE | -29.04 |
| Consensus MFE | -19.76 |
| Energy contribution | -20.27 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.25 |
| Mean z-score | -3.12 |
| Structure conservation index | 0.68 |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.923144 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18025461 100 - 27905053 AAGAAUGCUGAAACGCUGUUAAAAGCUACAAAAUGAAGUGGCCGUUGGCGGCAAU-GCAAUGCA-UACACUGC--GAAAGCAAAUCGCGAUUUAAUUAGCAGAG .....((((((...((((((((..(((((........)))))..)))))))).((-((...)))-)....(((--....))).............))))))... ( -30.70) >DroGri_CAF1 76159 96 - 1 AAGAAUGCUGAAAUGCUGUUAAAAGCUACAAAAUGAAGUGGCCAUUGGCGGCUUGUGGAAUUGGGUAAACGGG--CAACGGGCAACGGGC---AAUGGGCA--- .....((((.(..(((((((((..(((((........)))))..))))).((((((....(((......))).--..))))))....)))---).).))))--- ( -25.10) >DroSim_CAF1 69943 96 - 1 AAGAAUGCUGAAACGCUGUUAAAAGCUACAAAAUGAAGUGGCCGUUGGCGGCAAU-GCAAUGAA-UACACUGA------GCAAAUCGCGAUUUAAUUAGCAGAG .....((((((...((((((((..(((((........)))))..))))))))...-........-........------((.....)).......))))))... ( -25.40) >DroEre_CAF1 69838 100 - 1 AAGAAUGCUGAAACGCUGUUAAAAGCUACAAAAUGAAGUGGCCGUUGGCGGCAAU-GCAAUGCC-UACACUGC--GAAAGCAAAUCGGGCUUUAAUUAGCAGAG .....((((((...((((((((..(((((........)))))..))))))))...-.....(((-(....(((--....)))....)))).....))))))... ( -35.60) >DroYak_CAF1 71379 101 - 1 AAGAAUGCUGAAACGCUGUUAAAAGCUACAAAAUGAAGUGGCCGUUGGCGGCAAU-GCAAUGCAAUACACUGC--GAAAGCAAAUCGGGCUUUAAUUAGCAGAG .....((((((...((((((((..(((((........)))))..))))))))...-.....((.......(((--....)))......)).....))))))... ( -31.02) >DroAna_CAF1 64951 100 - 1 AAGAAUGCUGAAAUGCUGUUAAAAGCUACAAAAUGAAGUGGCCAUUGGCAGCAAU-GGGAUUGC-UGCACUGUGAGAAAUUAUAUCAU-AUUUACUUA-UAGAG .(((((.(((...(((((((((..(((((........)))))..))))))))).)-)).))).)-)...(((((((((((........-)))).))))-))).. ( -26.40) >consensus AAGAAUGCUGAAACGCUGUUAAAAGCUACAAAAUGAAGUGGCCGUUGGCGGCAAU_GCAAUGCA_UACACUGC__GAAAGCAAAUCGGGAUUUAAUUAGCAGAG .....((((((...((((((((..(((((........)))))..))))))))....(((.((.....)).)))......................))))))... (-19.76 = -20.27 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:35 2006