Locus 6809

Sequence ID 3R_DroMel_CAF1
Location 18,009,234 – 18,009,336
Length 102
Max. P 0.500000
window11056

overview

Window 6

Location 18,009,234 – 18,009,336
Length 102
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 83.77
Mean single sequence MFE -26.92
Consensus MFE -20.46
Energy contribution -21.53
Covariance contribution 1.06
Combinations/Pair 1.14
Mean z-score -1.42
Structure conservation index 0.76
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18009234 102 - 27905053
AUUGGAUUUAAGAAGCAGCCGAAAGAGGAGCCCAGGCAUUAAGUUUGGUCAGUAAUUAGGGCUUAGGAAAUAUAUGGUUGCGAAAUGGCAGGCCAUCUUAAA-------
......(((((((.(((((((......((((((.(((..........)))(....)..))))))..........)))))))....(((....))))))))))------- ( -25.19)
>DroSec_CAF1 51990 109 - 1
AUUGGAUUUAAGAAGCAGCCGCAAGAGGAGCCCAGGGAUUAUGGUUGGUCAGUAAUUAGGGCUUAGGAAAUAUAUGGUUGCGAAAUGGCAGGUCAUCUUUAAAUACAAA
.(((.(((((((..(((((((......((((((...((((((.(.....).)))))).))))))..........)))))))...((((....)))).))))))).))). ( -26.29)
>DroSim_CAF1 53915 109 - 1
AUUGGAUUUAAGAAGCAGCCGCAAGAGGAGCCCAGGGAUUAUGGUUGGUCAGUAAUUAGGGCUUAGGAAAUAUAUGGUUGUGGAAUGGCAAGCCAUCUUAUAAUACAAA
.(((....(((((.(((((((......((((((...((((((.(.....).)))))).))))))..........)))))))....(((....)))))))).....))). ( -26.59)
>DroYak_CAF1 54642 106 - 1
AUUGGAUUUAGGAAGCAGCCGCAAGAGGAGCCCAGCGAUUAUGUAUGGCCAGUAAUUAGGGCUCAGGAAAUGUGGAGUGGCCAAAUGGAAGGCAAUCCUA---UGCAUG
....(...(((((..((.(((((....((((((...((((((.........)))))).))))))......)))))..))(((........)))..)))))---..)... ( -29.60)
>consensus
AUUGGAUUUAAGAAGCAGCCGCAAGAGGAGCCCAGGGAUUAUGGUUGGUCAGUAAUUAGGGCUUAGGAAAUAUAUGGUUGCGAAAUGGCAGGCCAUCUUAAA_UACAAA
......(((((((.((((((....)..((((((...((((((.........)))))).))))))............)))))....(((....))))))))))....... (-20.46 = -21.53 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:31 2006