| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,000,115 – 18,000,235 |
| Length | 120 |
| Max. P | 0.511349 |
| Location | 18,000,115 – 18,000,235 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.89 |
| Mean single sequence MFE | -36.83 |
| Consensus MFE | -26.49 |
| Energy contribution | -26.27 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.72 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.511349 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18000115 120 - 27905053 UUCUCGACGCCGAUGGCAUCUAGAUCGGGAUCACCGACCUGUUUACAGAUCUCCAGGUCGUCGUAGCCAUUGUCCAGGAAGCUCUCGGCGUAUUGGGCCAGGCCCAAAGCUCUUAGCCAC ......(((((((.(((.(((.(((..((..(..(((((((............)))))))..)...))...)))..))).))).))))))).((((((...)))))).((.....))... ( -42.40) >DroVir_CAF1 52028 120 - 1 UUAUCAACGCCAAUGGCAUCCAGAUCCGGAUCACCGACCUGUUUGCAUAUCUCCAAGUCAUCGUAGCCAUUGUCCAGAAAACUUUCAGCGUACUGCGCCAGCCCAAGGGCGCGCAGCCAU ......(((((((((((((((......))))....(((.((............)).)))......)))))))....(((....))).)))).((((((..(((....))))))))).... ( -36.10) >DroGri_CAF1 49349 120 - 1 UUGUCAACGCCAAUGGCAUCCAAAUCGGGAUCACCGACUUGCUUGCAUAUCUCCAAGUCAUCGUAGCCAUUGUCCAGAAAACUUUCCGCAUACUGUGCCAGACCAAGGGCGCGCAGCCAC ........(((((((((((((......))))....((((((............))))))......)))))))......................(((((........)))))))...... ( -29.50) >DroWil_CAF1 48183 120 - 1 UUCUCCACACCAAUGGCAUCCAGAUCAGGAUCACCGACCUGUUUGCAUAUCUCCAAAUCAUCAUAGCCAUUGUCAAGAAAACUUUCGGCAUAUUGUGCCAAGCCCAAGGCACGAAGCCAU ((((......(((((((((((......))))....((...(((((........)))))..))...)))))))...)))).......(((...(((((((........))))))).))).. ( -30.10) >DroMoj_CAF1 56569 120 - 1 UUAUCGACGCCAAUGGCAUCCAGAUCGGGAUCGCCGACUUGUUUGCAAAUCUCCAAGUCAUCGUAGCCAUUGUCCAGGAAGCUUUCCGCGUAUUGCGCUAGCCCCAGGGCGCGCAGCCAU ......(((((((((((((((......))))....((((((............))))))......)))))))....(((.....))))))).((((((..(((....))))))))).... ( -40.60) >DroAna_CAF1 41008 120 - 1 UUCUCCACGCCGAUGGCGUCCAGGUCAGGAUCACCGACCUGCUUGCAGAUCUCCAGGUCAUCAUACCCAUUGUCCAGGAAGCUCUCGGCGUACUGGGCCAGGCCCAAAGCCCUCAGCCAC ......(((((((.(((.(((.((.((((....))((((((............))))))...........)).)).))).))).))))))).(((((...(((.....)))))))).... ( -42.30) >consensus UUCUCAACGCCAAUGGCAUCCAGAUCGGGAUCACCGACCUGUUUGCAUAUCUCCAAGUCAUCGUAGCCAUUGUCCAGAAAACUUUCGGCGUACUGCGCCAGGCCCAAGGCGCGCAGCCAC ......(((((((((((((((......))))....((((((............))))))......)))))))....((......)).))))...(((((........)))))........ (-26.49 = -26.27 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:26 2006