Locus 6803

Sequence ID 3R_DroMel_CAF1
Location 17,976,548 – 17,976,639
Length 91
Max. P 0.556829
window11044

overview

Window 4

Location 17,976,548 – 17,976,639
Length 91
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 94.02
Mean single sequence MFE -20.55
Consensus MFE -18.38
Energy contribution -18.38
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.15
Structure conservation index 0.89
SVM decision value 0.05
SVM RNA-class probability 0.556829
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17976548 91 + 27905053
GCUGGAGCCUUUUGUUUGAAGUUUGUCUUCGAAUGGAAAACUUUU---GUGAAAAUUAAUUACGAAUUCGUGAGGUCAAUCGUUUUUCGGUGAU
((..(((..(((..(((((((.....)))))))..)))..)))..---)).........(((((....))))).((((.(((.....))))))) ( -21.00)
>DroVir_CAF1 25727 88 + 1
---CGAGCCUUUUGUUUGAAGUUUGUCUUCGAAUGGAAAACUUUU---GUGAAAAUUAAUUACGAAUUCGUGAGGUCAAUCGUUUUUCGGUGAU
---...(((....((((((((.....))))))))(((((((.(((---((((.......))))))).((....))......))))))))))... ( -20.40)
>DroPse_CAF1 21760 94 + 1
ACAGCAGCCUUUUGUUUGAAGUUUGUCUUCGAAUGGAAAACUUUUUGGGUGAAAAUUAAUUACGAAUUCGUGAGGUCAAUCGUUUUUCGGUGAU
......(((....((((((((.....))))))))(((((((...((((((....)))..(((((....)))))...)))..))))))))))... ( -20.60)
>DroGri_CAF1 23206 89 + 1
G--CAAGCCUUUUGUUUGAAGUUUGUCUUCGAAUGGAAAACUUUU---GUGAAAAUUAAUUACGAAUUCGUGAGGUCAAUCGUUUUUCGGUGAU
.--...(((....((((((((.....))))))))(((((((.(((---((((.......))))))).((....))......))))))))))... ( -20.40)
>DroAna_CAF1 18437 90 + 1
-GUGCUGCCUUUUGUUUGAAGUUUGUCUUCGAAUGGAAAACUUUU---GUGAAAAUUAAUUACGAAUUCGUGAGGUCAAUCGUUUUUCGGUGAU
-.....(((....((((((((.....))))))))(((((((.(((---((((.......))))))).((....))......))))))))))... ( -20.30)
>DroPer_CAF1 20828 94 + 1
ACAGCAGCCUUUUGUUUGAAGUUUGUCUUCGAAUGGAAAACUUUUUGGGUGAAAAUUAAUUACGAAUUCGUGAGGUCAAUCGUUUUUCGGUGAU
......(((....((((((((.....))))))))(((((((...((((((....)))..(((((....)))))...)))..))))))))))... ( -20.60)
>consensus
_C_GCAGCCUUUUGUUUGAAGUUUGUCUUCGAAUGGAAAACUUUU___GUGAAAAUUAAUUACGAAUUCGUGAGGUCAAUCGUUUUUCGGUGAU
......(((....((((((((.....))))))))(((((((........(((.......(((((....)))))..)))...))))))))))... (-18.38 = -18.38 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:20 2006