| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,967,500 – 17,967,593 |
| Length | 93 |
| Max. P | 0.963487 |
| Location | 17,967,500 – 17,967,593 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 78.16 |
| Mean single sequence MFE | -28.60 |
| Consensus MFE | -21.26 |
| Energy contribution | -20.94 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.963487 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17967500 93 + 27905053 GCAGUGGCAGUAACAGAGGCAGAGGCAG---ACGACGACGUCGUCGGAGUUUCAAACAGGCCCUGCGAACAGGAACUGUUGACUGCUUUUGAACUU ((....)).....(((((((((((((..---.(((((....)))))..))))).(((((..((((....))))..)))))...))))))))..... ( -34.70) >DroSec_CAF1 10830 77 + 1 GCAGUGGCAGUAACAGAG------GCAGACGACGACGACGACGUCGGAGUUUCAAAC-------------AGGAACUGUUGACUGCUUUUGAACUU ((....)).....(((((------((((.((((((((....))))..((((((....-------------.)))))))))).)))))))))..... ( -27.00) >DroSim_CAF1 12262 83 + 1 GCAGUGGCAGUAACAGAGGCAGAGGCAGACGACGACGACGACGUCGGAGUUUCAAAC-------------AGGAACUGUUGACUGCUUUUGAACUU ((....)).....(((((((((.(((((((..(((((....)))))..))(((....-------------..))))))))..)))))))))..... ( -27.50) >DroYak_CAF1 11662 81 + 1 GCAGUGGCAGCGGCAUAG---------------GACGACGACGUCGGAGUUUCAAACAGGCCCUGCGAACAGGAACUGUUGACUGCUUUUGAACUU (((((.((((.(((.(..---------------(((..((....))..)))..).....))))))).(((((...))))).))))).......... ( -25.20) >consensus GCAGUGGCAGUAACAGAG______GCAG___ACGACGACGACGUCGGAGUUUCAAAC_____________AGGAACUGUUGACUGCUUUUGAACUU .(((.(((((((((..................(((((....))))).((((((..................)))))))))).))))).)))..... (-21.26 = -20.94 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:18 2006