Locus 680

Sequence ID 3R_DroMel_CAF1
Location 2,455,783 – 2,455,875
Length 92
Max. P 0.997896
window1075

overview

Window 5

Location 2,455,783 – 2,455,875
Length 92
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 79.26
Mean single sequence MFE -29.34
Consensus MFE -19.86
Energy contribution -21.02
Covariance contribution 1.16
Combinations/Pair 1.17
Mean z-score -3.03
Structure conservation index 0.68
SVM decision value 2.96
SVM RNA-class probability 0.997896
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2455783 92 - 27905053
----------------GUGAUGAAAAUGCCUAACUUAUGAGGCUCUGGCCUGCUUAAAAGGGUGAGGGUUAU-----------GCAAGACAAAUUGCAAAUAGAUUGGGUAAGUCGCAG-
----------------(((((.....(((((((.((((..((((((.((((........)))).)))))).(-----------((((......))))).)))).))))))).)))))..- ( -30.60)
>DroSec_CAF1 14780 92 - 1
----------------GUGAUGAAAAUGCCUAACUUAUGAGGCUCUGGCCUGCUUAAAAGGGUGAGGGUUAU-----------GCAAGACAAAUUGCAAAUAGAUUGGGUAAGUCGCAG-
----------------(((((.....(((((((.((((..((((((.((((........)))).)))))).(-----------((((......))))).)))).))))))).)))))..- ( -30.60)
>DroSim_CAF1 11499 92 - 1
----------------GUGAUGAAAAUGCCUAACUUAUGAGGCUCUGGCCUGCUUAAAAGGGUGAGGGUUAU-----------GCAAGACAAAUUGCAAAUAGAUUGGGUAAGUCGCAG-
----------------(((((.....(((((((.((((..((((((.((((........)))).)))))).(-----------((((......))))).)))).))))))).)))))..- ( -30.60)
>DroEre_CAF1 15737 92 - 1
----------------GUGAUGAAAAUGCUUAACUUAUGAGGCUCUGGCCUGCUUAAAAGGGUGAGGGUUAU-----------GCAAGACAAAUUGCAAAUAGAUUGGGUAAGUCGCAG-
----------------(((((.....(((((((.((((..((((((.((((........)))).)))))).(-----------((((......))))).)))).))))))).)))))..- ( -27.80)
>DroAna_CAF1 15139 120 - 1
UACCCCCGAAACGAAAGUGUCGAAAAUGAUUAACGUGUGUGCCACAGGCCUACUUAAAACAGAAUGCCUGAGCCAGCACCCGGCCGAGACAAAUUGCAAAUAGAUUGGGUAAGUCUCCCU
(((((.(((.((....)).)))...........((.((((((..(((((...((......))...))))).))..)))).))........................)))))......... ( -27.10)
>consensus
________________GUGAUGAAAAUGCCUAACUUAUGAGGCUCUGGCCUGCUUAAAAGGGUGAGGGUUAU___________GCAAGACAAAUUGCAAAUAGAUUGGGUAAGUCGCAG_
................(((((.....(((((((..(((..((((((.((((........)))).)))))).............((((......))))..)))..))))))).)))))... (-19.86 = -21.02 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:08 2006