| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,950,396 – 17,950,494 |
| Length | 98 |
| Max. P | 0.779245 |
| Location | 17,950,396 – 17,950,494 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 81.29 |
| Mean single sequence MFE | -29.35 |
| Consensus MFE | -22.26 |
| Energy contribution | -22.45 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.779245 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17950396 98 + 27905053 AGUCGAAAAAGCGAAAAACUCUGCAAAAGAGUCGCGAUUUUCUUAGCGACAUUUUCAUGGCGCGUGGUCGAAACCAUCAGCGCCAAAAGCAACAGCAG-------- ..........(((((((..(((.....)))(((((..........))))).))))).(((((((((((....)))))..))))))...))........-------- ( -29.90) >DroYak_CAF1 27940 106 + 1 AGCCGAAAAAGCGUAAAACUCUGCAGAAGAGUCGCGAUUUUCUAAGCGACAUUUUCAUGGCGCGUGGUCGAAAUCAUCAGCGUCAAAAGCAGCAGCAGCAACAGCA ..........((......((((((.((((((((((..........))))).))))).((((((.((((.(....)))))))))))......)))).)).....)). ( -31.00) >DroMoj_CAF1 12266 106 + 1 UGCAGAAGAAGCGCAAAGCGUUGCAGAAGAGUCGCGAUUUUCUCACAGAUAUUUUCAUGGCGCGUGGACGUAACCAUCAGCGUCAGCAGCGAAAUCAACAGCAGCA (((.......((.....))(((((.(((((((((.((.....)).).))).))))).((((((((((......))))..)))))))))))..........)))... ( -28.40) >DroAna_CAF1 22965 106 + 1 AGUCCAAGAAGCGAAAAACUCUACAGAAGAGUCGCGACUUCCUCAGCGACAUUUUCAUGGCGCGUGGUCGCAACCAUCAGCGUCAAAAGCAACAUCAGCAGCAGCA ..........((.............((((((((((..........))))).))))).(((((((((((....)))))..))))))...)).......((....)). ( -28.10) >consensus AGCCGAAAAAGCGAAAAACUCUGCAGAAGAGUCGCGAUUUUCUCAGCGACAUUUUCAUGGCGCGUGGUCGAAACCAUCAGCGUCAAAAGCAACAGCAGCAGCAGCA ..........((.............((((((((((..........))))).))))).((((((((((......))))..))))))...))................ (-22.26 = -22.45 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:09 2006