| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,947,242 – 17,947,346 |
| Length | 104 |
| Max. P | 0.510248 |
| Location | 17,947,242 – 17,947,346 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 78.22 |
| Mean single sequence MFE | -22.63 |
| Consensus MFE | -12.04 |
| Energy contribution | -12.04 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.53 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.510248 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17947242 104 - 27905053 AUGCCACAAACAAAAAAUAUGCCAUAAAUAUUUGGCAUGCUUUGUCGU-CGUUUGAACAUGUGUUAGCAAUCGA---GAAAUAUAUGGCAAUACAUAUU-----AAGAG-UUUU .(((((...(((((...(((((((........))))))).)))))..(-((.(((.((....))...))).)))---........))))).........-----.....-.... ( -21.00) >DroSec_CAF1 27348 104 - 1 AUGAAACAAACAAAAAAUAUGCCAUAAAUAUUUGGCAUGCUUUGUCGU-CGUUUGAACAUGUGUUAGCAAUCGA---GAAAUAUAUGGCAAUACAUAUU-----AAAAG-UUUU ..(((((..(((((...(((((((........))))))).)))))...-..(((((..(((((((.((.....(---....).....))))))))).))-----))).)-)))) ( -20.50) >DroEre_CAF1 24706 104 - 1 AUGCCACUAACAAAAAACAUGCCAUAAAUAUUUGGCAUGCUUUGUCGU-CGUUUGAACAUGUGUUAGCAAUCGA---GAAAAAUAUGGCAGUACAUAUU-----AACAG-CUUA .(((((...(((((...(((((((........))))))).)))))..(-((.(((.((....))...))).)))---........))))).........-----.....-.... ( -22.80) >DroYak_CAF1 23934 104 - 1 AUGCCACCAACAAAAAAUAUGCCAUAAAUAUUUGGCAUGCUUUGUCGU-CGCUUGAACAUGUGUUAGCAAUCGA---GAAAUAUAUGGCACUACAUAUU-----AAGAG-UUUG .(((((...........(((((((........))))))).(((.(((.-.(((..(((....))))))...)))---.)))....))))).........-----.....-.... ( -22.30) >DroAna_CAF1 20099 105 - 1 CAGAUUC-AAC--GAAAUAUGCCUGAAAUAUUUGGCAUGCUUUGGCGA-CGACAGAACAUAUGUUUGCAAUCCAGCGGAAAUAUAUGAGCAUUUUUAUU-----AAUAGGUUUA .....((-..(--(((.((((((..........)))))).))))..))-.....(..(((((((((.(........).)))))))))..).........-----.......... ( -19.30) >DroPer_CAF1 29650 110 - 1 AUGCCACAAACA--AAAUAUGCCACGAAUAUUUGGCAUGCUUUUUUUUU--UUGAAACAUAUGUUUGCAAUCGAGCGGAUAUAUGUGGCCAAAUUUAUGUUCAUUAUAGAUAAA ..(((.((((.(--((((((((((........)))))))....)))).)--)))..((((((((((((......)))))))))))))))...(((((((.....)))))))... ( -29.90) >consensus AUGCCACAAACAAAAAAUAUGCCAUAAAUAUUUGGCAUGCUUUGUCGU_CGUUUGAACAUGUGUUAGCAAUCGA___GAAAUAUAUGGCAAUACAUAUU_____AAGAG_UUUA .................(((((((........)))))))..................((((((((..............))))))))........................... (-12.04 = -12.04 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:08 2006