Locus 6795

Sequence ID 3R_DroMel_CAF1
Location 17,946,210 – 17,946,301
Length 91
Max. P 0.854375
window11030

overview

Window 0

Location 17,946,210 – 17,946,301
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 72.89
Mean single sequence MFE -9.74
Consensus MFE -6.09
Energy contribution -5.87
Covariance contribution -0.22
Combinations/Pair 1.14
Mean z-score -1.59
Structure conservation index 0.62
SVM decision value 0.80
SVM RNA-class probability 0.854375
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17946210 91 + 27905053
GAAAUUAAACAGAAUUCAUAGCAAAAACUGACUAUAAAACUCAUACCCAUUUCUGCAGAAUAUCUAACAAUAUGACCUAAUGUUGUAAAUA
..........(((((((...(((.(((.((..(((.......)))..))))).))).)))).))).(((((((......)))))))..... (  -9.30)
>DroSec_CAF1 26344 72 + 1
------AAAUACACUUCA-------ACUUGACGGU------CAUACCCGUUUCUGCAGAAUAUCUAACAACAUAACCUAAUGUUGUAAAUA
------.......((.((-------....(((((.------.....)))))..)).))........(((((((......)))))))..... ( -12.00)
>DroSim_CAF1 9501 91 + 1
GAAAUUAAACAAAAUUCAUAGCAAAAACUGACGAUAAAACUUAUACCUUCUUCUGCAGAAUAUCUAACAACAUAACCUAAUGUUGUANNNN
...........................(((..((.................))..)))........(((((((......)))))))..... (  -7.93)
>consensus
GAAAUUAAACAAAAUUCAUAGCAAAAACUGACGAUAAAACUCAUACCCAUUUCUGCAGAAUAUCUAACAACAUAACCUAAUGUUGUAAAUA
..................................................................(((((((......)))))))..... ( -6.09 =  -5.87 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:07 2006