| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,944,402 – 17,944,522 |
| Length | 120 |
| Max. P | 0.757286 |
| Location | 17,944,402 – 17,944,522 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.17 |
| Mean single sequence MFE | -28.20 |
| Consensus MFE | -21.92 |
| Energy contribution | -21.72 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.757286 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17944402 120 + 27905053 UGGUCCUAACUGUAUAUCGAAAUGGUCUGAUUUAGACUCAUUUUGGUCAUAUAAUUUCAAACUCAAGUUAUACUUAACGGCGAACUGAACAAUUUCAUAAUCUUUGAGUUCGGAUAAGGG ....(((...(((((((((((((((((((...))))).))))))))).)))))..(((.(((((((((((....)))).......((((....))))......))))))).)))..))). ( -27.50) >DroSec_CAF1 24519 120 + 1 UGGACCUAACUGUAUAUCGAAAUUGUCUGAUUUUGUAUCAUUUUGAUCAUAUAAUUUCAAACUCAAGUUAUACUUAACAGCGAACUGAACAAUUUCAUAAUCUUUCAGUUCGGAUAAGGG ....(((..((((.....((((((((.(((((..(......)..))))).))))))))......(((.....))).))))(((((((((..(((....)))..)))))))))....))). ( -28.60) >DroSim_CAF1 7679 120 + 1 UGGACCUAACUGUAUAUCGAAAUUGUCUGAUUUUGUAUCAUUUUGAUCAUAUAAUUUCAAACUCAAGUUAUACUUAACAGCGAACUGAACAAUUUCAUAAUCCUUCAGUUCGGAUAAGGG ....(((..((((.....((((((((.(((((..(......)..))))).))))))))......(((.....))).))))(((((((((..(((....)))..)))))))))....))). ( -28.60) >DroEre_CAF1 21831 120 + 1 UGGACCCAGCUGUAUAUCGAAAUGGUCUGACUUGGUGUCAUUUUGUUCAUAUAAUUUCAAACUCAAAUUGUACUUGAUGGCGAACUGCACAAUUUCAUAAUCCUUCAGUUCGGAUAGGGG ....(((.......((((((((..(..((((.....))))..)..))..((((((((.......)))))))).)))))).(((((((....(((....)))....)))))))....))). ( -24.10) >DroYak_CAF1 20900 120 + 1 UGGACCCAGCUGUAUAUCGAAAUGGCCAGAGUUCGUGUCAUUUGGGUCAUAUAAUUUCAAACUCAAAUUGUACUUGAUGGCGAACUGAAUAAUUUCAUAGUCUUUCAGUUCGGACAAGGG ..(((((((.((.(((.((((..........))))))))).))))))).((((((((.......))))))))((((....(((((((((..(((....)))..)))))))))..)))).. ( -32.20) >consensus UGGACCUAACUGUAUAUCGAAAUGGUCUGAUUUUGUAUCAUUUUGAUCAUAUAAUUUCAAACUCAAGUUAUACUUAACGGCGAACUGAACAAUUUCAUAAUCUUUCAGUUCGGAUAAGGG ....(((..((((..((((((((((((.......).)))))))))))..((((((((.......))))))))....))))(((((((((..(((....)))..)))))))))....))). (-21.92 = -21.72 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:06 2006