| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,942,814 – 17,942,934 |
| Length | 120 |
| Max. P | 0.805692 |
| Location | 17,942,814 – 17,942,934 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 88.89 |
| Mean single sequence MFE | -32.90 |
| Consensus MFE | -27.12 |
| Energy contribution | -27.47 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.805692 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17942814 120 - 27905053 UGAGCCAGGCUGUUAGUCAGGAAACUGAGUUCCUACAGCUAAAAUAUCUUAACAAUAUUGUGCGUUCGAUGAUUAAACUGCAUAAGAUGGAAACACUUGUGAUUGUUAAGCAUCAUCUGG .((((((((((((.(.((((....)))).)....))))))..(((((.......))))).)).))))((((.((((....((((((.((....))))))))....)))).))))...... ( -36.40) >DroSec_CAF1 22923 120 - 1 UGAGCCAGGCUGUUAGCCAGGAAACUGAGUUCCCACAGCUAAAAUAUUUAAACAAACUUGUGCGUUUGAUGAUUAAACGGCAUAAGAUGGAAACACUUGUGAUUGUUAAGCAUCAUCUGG ....(((((((((.((((((....))).)))...)))))...........................(((((....(((((((((((.((....)))))))).)))))...))))).)))) ( -35.20) >DroYak_CAF1 19309 120 - 1 UGAGCCAAGCUGUUAGUGAGGAAACCGAAUUCCCGCAGCUAAAAUAUCUCAACAAAGUUGUGCGUUUAAUGAUUAAACUGCAUAAGAUGGAAACACUGGUGAUAGUUCAACAUCAUCUGC (((((..((((((....(.((((......)))))))))))....(((((((......(((((((((((.....))))).))))))..((....)).))).)))))))))........... ( -27.10) >consensus UGAGCCAGGCUGUUAGUCAGGAAACUGAGUUCCCACAGCUAAAAUAUCUAAACAAAAUUGUGCGUUUGAUGAUUAAACUGCAUAAGAUGGAAACACUUGUGAUUGUUAAGCAUCAUCUGG .(((((.((((((.((((((....))).)))...))))))...........(((....)))).))))((((((..(((((((((((.((....)))))))).)))))....))))))... (-27.12 = -27.47 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:03 2006