Locus 6790

Sequence ID 3R_DroMel_CAF1
Location 17,936,590 – 17,936,683
Length 93
Max. P 0.889213
window11020

overview

Window 0

Location 17,936,590 – 17,936,683
Length 93
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.67
Mean single sequence MFE -33.37
Consensus MFE -15.00
Energy contribution -15.50
Covariance contribution 0.50
Combinations/Pair 1.21
Mean z-score -2.66
Structure conservation index 0.45
SVM decision value 0.96
SVM RNA-class probability 0.889213
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17936590 93 + 27905053
--GCAG--AGGCC--AAAAAUUAUGCAACUGCAGCCG------CGGCGGUGC-AACAGCUGUUGACACAUGCCGCCAGCGGCCAUUGUUGUAU----GGCCAACACCACU----------
--....--.((((--(.......((((((....((((------(((((((.(-(((....))))......)))))).)))))....)))))))----)))).........---------- ( -38.61)
>DroVir_CAF1 9274 104 + 1
--CCAA--AUGCC--AAAAAUUAUGCAACA---CAUG------CGAGUGCGCGAACAGCUGUUGACAUAUUCCACCAGCGGCCAUU-UUGUAGUCCACGCCAACACCAACAGCCGUCGCA
--....--.....--........((((...---..))------)).....((((...((((((((((....((......)).....-.))).((........))..)))))))..)))). ( -19.60)
>DroPse_CAF1 14408 97 + 1
--GCAA--AGGCC--AAAAAUUAUGCAACUGCAACGGCGAAUGCAACG--GC-AACAGCUGUUGACACAUGCCGCCAGCGGGCAUUGUUGUAU----GGCCAACACCAAU----------
--....--.((((--(..(((.((((..((((..(((((..(((((((--((-....))))))).))..)))))...)))))))).)))...)----)))).........---------- ( -38.10)
>DroYak_CAF1 10579 95 + 1
GGGCAG--AGGCC--AAAAAUUAUGCAACUGCAGCCG------CGGCGGUGC-AACAGCUGUUGACACAUGCCGCCAGCGGCCAUUGUUGUAU----GGCCAACACCACU----------
((((((--..((.--.........))..)))).((.(------(((((((((-(((....)))).))).))))))..))((((((......))----))))....))...---------- ( -40.00)
>DroAna_CAF1 13325 95 + 1
--GCAGCAAGGCCCGAAAAAUUGUGCAACUGCAUUGG------UAACA--GC-AACAGCUGUUGACACAUGCCGCCGGCGGGCAUUGUUGUAU----GGCCAACACCACU----------
--(((((((.(((((.....(((.((....((((((.------(((((--((-....))))))).)).)))).)))))))))).))))))).(----((......)))..---------- ( -32.90)
>DroPer_CAF1 18299 91 + 1
--GCAG--AGGCC--AAAAAUUAUGCAACUGCAACGG------CAACG--GC-AACAGCUGUUGACACAUGCCGCCAGCGGGCAUUGUUGUAU----GGCCAACACCAAU----------
--....--.((((--(..(((.((((..((((..(((------(((((--((-....))))).......)))))...)))))))).)))...)----)))).........---------- ( -31.01)
>consensus
__GCAG__AGGCC__AAAAAUUAUGCAACUGCAACGG______CAACG__GC_AACAGCUGUUGACACAUGCCGCCAGCGGCCAUUGUUGUAU____GGCCAACACCAAU__________
.........((((.........(((((((..............(((((..((.....)))))))....((((((....))).))).)))))))....))))................... (-15.00 = -15.50 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:57 2006