Locus 6788

Sequence ID 3R_DroMel_CAF1
Location 17,922,241 – 17,922,342
Length 101
Max. P 0.889338
window11017

overview

Window 7

Location 17,922,241 – 17,922,342
Length 101
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 86.80
Mean single sequence MFE -23.40
Consensus MFE -16.13
Energy contribution -16.47
Covariance contribution 0.34
Combinations/Pair 1.07
Mean z-score -3.19
Structure conservation index 0.69
SVM decision value 0.96
SVM RNA-class probability 0.889338
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17922241 101 - 27905053
UAAUCACAAAAAUUUGUCAUAAAACUUU-GGCAGACGCAAAAGUUUUUAGCUGCACAAAGUCAAAGUCGUUGACGUCGUCAUUCUCGAUGACUCAAAAAAAA
............(((((((.((((((((-.((....)).))))))))....)).)))))(((((.....)))))((((((......)))))).......... ( -22.00)
>DroYak_CAF1 11971 97 - 1
UAAUCACAAAAAUUUGUCAUAAAACUUU-GGCAGACGCAAAAGUUUUU-GCUGCACAAAGUCAAAGUCGUUGACGUCGUCAUUCUCGAUGACUCAAA---AA
............(((((((.((((((((-.((....)).)))))))).-..)).)))))(((((.....)))))((((((......)))))).....---.. ( -22.60)
>DroAna_CAF1 12581 96 - 1
UAAUCACAAAAAUUUGUCAUAAAACUUUCGACAGACGCCAAAGUUUUUGGCUGCACAAAGUCAAAGACAU---CGCCAUCUUUCUCGAUGGCUUAAAU---U
............((((((...........)))))).......((((((((((......))))))))))..---.((((((......))))))......---. ( -25.60)
>consensus
UAAUCACAAAAAUUUGUCAUAAAACUUU_GGCAGACGCAAAAGUUUUU_GCUGCACAAAGUCAAAGUCGUUGACGUCGUCAUUCUCGAUGACUCAAA___AA
............(((((((.((((((((.(.(....)).))))))))....)).)))))(((((.....)))))((((((......)))))).......... (-16.13 = -16.47 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:54 2006