Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 17,914,456 – 17,914,575 |
Length | 119 |
Max. P | 0.590209 |
Location | 17,914,456 – 17,914,575 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.06 |
Mean single sequence MFE | -30.47 |
Consensus MFE | -18.46 |
Energy contribution | -19.10 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.26 |
Mean z-score | -2.03 |
Structure conservation index | 0.61 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.590209 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17914456 119 - 27905053 CCCUUUACGAUUGGUA-UGGUUAUGCCACCCAAAUGUUCAUUGAAUUUUAAGCCAGUCGAGCGUUUUUCUGAAUUUAGCACAUCCGCAAGGGCAGUCCAUUGAUUUCAAUGCAUUGUAUU .((((..((((((((.-(((.....)))..(((.......)))........)))))))).(((..(..(((....)))...)..)))))))(((((.(((((....))))).)))))... ( -28.00) >DroSec_CAF1 2999 118 - 1 CCCUUUACGAUUGGUA-UGGUUAUGCCACCCAAAUGUUCAUUGAAUUAUAAGCCAGUCGAGCGUU-UGCUGAAUCUAGCACAUCCGCAAGGGCAAUCCAUUGAUUUCAAUGCAUUGUAUU .((((..((((((((.-(((.....)))..(((.......)))........)))))))).(((..-(((((....)))))....)))))))(((((.(((((....))))).)))))... ( -32.80) >DroSim_CAF1 1503 107 - 1 CCCUUUACGAUUGGUA-UGGUUAUGCCACCCAAAUGUUCAUUGAAUUUUAAGCCAGUCG------------AAUUUAGCACAUCCGCAAGGGCAAUCCAUUGAUUUCAAUGCAUUGUAUU .((((..((((((((.-(((.....)))..(((.......)))........))))))))------------......((......))))))(((((.(((((....))))).)))))... ( -26.70) >DroEre_CAF1 2419 112 - 1 CCCUUUAUGAUUGCGACUGCCUAUGCCGCCCAAAUGUUCACUGGAUU-UAAGCCAGUCGAGCAUUU-GCUGAAUUUAGCACAUCCGCAAG-UCAUACCAUUGAUUUCAGU-----GUAUC .....((((((((((..((.(((.......((((((((((((((...-....))))).))))))))-).......)))..))..))).))-))))).(((((....))))-----).... ( -31.74) >DroYak_CAF1 3119 119 - 1 CCCUUUAUGAUUGGCA-UGGUUAUGCCACCCAAAUGUUCAUUGAAUUGUGAGCCAGUGGAGCGUUUCUCUGAACUUGGCACAUCCGCAAGGACAUUCCAUUGAUUUCAGUGCAAUGUAUA ...........(((((-(....)))))).(((...((((((......))))))...))).(((((.(.(((((..(((....(((....)))....))).....))))).).)))))... ( -33.10) >consensus CCCUUUACGAUUGGUA_UGGUUAUGCCACCCAAAUGUUCAUUGAAUUUUAAGCCAGUCGAGCGUUU_GCUGAAUUUAGCACAUCCGCAAGGGCAAUCCAUUGAUUUCAAUGCAUUGUAUU .((((..((((((((..(((.....))).......((((...)))).....))))))))..................((......))))))(((((.(((((....))))).)))))... (-18.46 = -19.10 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:51 2006