| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,911,827 – 17,911,944 |
| Length | 117 |
| Max. P | 0.992962 |
| Location | 17,911,827 – 17,911,944 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.91 |
| Mean single sequence MFE | -30.40 |
| Consensus MFE | -18.83 |
| Energy contribution | -16.73 |
| Covariance contribution | -2.09 |
| Combinations/Pair | 1.43 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.62 |
| SVM decision value | 2.36 |
| SVM RNA-class probability | 0.992962 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17911827 117 - 27905053 GCCUAUUAAUU-UGGGCCAUUUAUUCA-AAAAUUGUUCAACGAUUUUCGUCGCUGCCACAUCAGGCAUAGUUUAAAAGGAAAUUUU-GUGUUUUCAUUAGCGAAAGUUUGAAUGAACAAU (((((......-)))))..........-...((((((((..(((((((((...((((......))))..........((((((...-..))))))....)))))))))....)))))))) ( -29.30) >DroSec_CAF1 499 117 - 1 GCCCAUUUAUU-UGGGCUAUUUAUUCA-AAAAUGGUUCAUCGAUUUGCCCUGCUGGCAUAUCAGGCAUAGUUUUCAAGGAAAAUUU-GUGUUUUCAUUACCGAAAGCUUGGAUGAGCAAU (((((......-)))))..........-......((((((((((.((((.....)))).)))...((.(((((((...((((((..-..))))))......))))))))))))))))... ( -35.90) >DroYak_CAF1 413 120 - 1 GCUCAUUAAUUUUGGGCCAUUUUUCGAAAAAAUUGUUCGGCAAUUUUCCUUGCCGGCAUAUCAGGCAUAAUUUUAUACCAAAUUUUCACAUUUUCAUGAGCGAAAAUUUGUGCGAACGUG (((((.......))))).....((((..((((((((.((((((......))))))((.......))))))))))....(((((((((.(..........).)))))))))..)))).... ( -26.00) >consensus GCCCAUUAAUU_UGGGCCAUUUAUUCA_AAAAUUGUUCAACGAUUUUCCUUGCUGGCAUAUCAGGCAUAGUUUUAAAGGAAAUUUU_GUGUUUUCAUUAGCGAAAGUUUGAAUGAACAAU (((((.......))))).................(((((((((........(((.........))).......................((((((......)))))))))).)))))... (-18.83 = -16.73 + -2.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:50 2006