Locus 6783

Sequence ID 3R_DroMel_CAF1
Location 17,909,670 – 17,909,790
Length 120
Max. P 0.573163
window11011

overview

Window 1

Location 17,909,670 – 17,909,790
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.42
Mean single sequence MFE -33.33
Consensus MFE -28.74
Energy contribution -29.22
Covariance contribution 0.48
Combinations/Pair 1.12
Mean z-score -1.23
Structure conservation index 0.86
SVM decision value 0.08
SVM RNA-class probability 0.573163
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17909670 120 + 27905053
UGCAACAAACUUUGCCAUAUAGAACAUAAAGUUCGCCGUUCUAAGAGCGGCUCGUGUUCGCAUAGAAAGUGGGUGGCUGUUUCAGGUUAAUUUUGCAGCUCGCUUAGUUUUUACCUUGCA
.((((.......(((.((((.((((.....))))(((((((...)))))))..))))..)))((((((.(((((((((((..............))))).)))))).))))))..)))). ( -36.84)
>DroSec_CAF1 50818 120 + 1
UGCAACAAACUUUGCCAUAUAGAACAUAAAGUUCGCCGUUCUAAGAGCGUCUCGUGUUCGCCUAGAAAGUGGGUGGCUGUUUCAGGUUAAUUUUGCAGCUCGCUUAGUUUUUACCUUGCA
.(((..((((...(((((...((((.....)))).((.(((((.(((((.....)))))...)))))...))))))).)))).((((.((((..((.....))..))))...))))))). ( -30.50)
>DroSim_CAF1 54424 120 + 1
UGCAACAAACUUUGCCAUAUAGAACAUAAAGUUCGCCGUUCUAAGAGCGUCUCGUGUUCGCAUAGAAAGUGGGUGGCUCUUUCAGGUUAAUUUUGCAGCUCGCUUAGUUUUUACCUUGCA
.(((.........(((((...((((.....)))).((.(((((.(((((.....)))))...)))))...)))))))......((((.((((..((.....))..))))...))))))). ( -29.10)
>DroEre_CAF1 53951 119 + 1
UGCAGCAAACUUUGCCAUACAGAACAUAAAGUUUGCCCUUCCACGAGCGGCUCGUGUUCGCUUAGAAAGUGGGUGGCUGUUCCAGGUUAAU-UUGCAGCCCGCUUAGUUUUUACCUUUCA
.((.((((((((((............)))))))))).....((((((...))))))...)).((((((.(((((((((((...........-..)))).))))))).))))))....... ( -33.92)
>DroYak_CAF1 54076 120 + 1
UGCAGCAAACUUUGCCAUAUAGAACCCAAAGUUCGCCGUUCCAAGAGCGGCUCGUGUUCGCAUAGAAAGUGGGUGGCUGUUUCAGGUUAAUUUUGCAGCACUCCCAGUUUUCACCUUCCA
(((.(((((.((.(((..((((.(((((...((((((((((...)))))))..(((....))).)))..)))))..))))....))).)).))))).))).................... ( -36.30)
>consensus
UGCAACAAACUUUGCCAUAUAGAACAUAAAGUUCGCCGUUCUAAGAGCGGCUCGUGUUCGCAUAGAAAGUGGGUGGCUGUUUCAGGUUAAUUUUGCAGCUCGCUUAGUUUUUACCUUGCA
.((((((..............((((.....))))(((((((...)))))))...)))).)).((((((.(((((((((((..............))))).)))))).))))))....... (-28.74 = -29.22 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:48 2006