Locus 6782

Sequence ID 3R_DroMel_CAF1
Location 17,907,033 – 17,907,135
Length 102
Max. P 0.947295
window11010

overview

Window 0

Location 17,907,033 – 17,907,135
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 75.86
Mean single sequence MFE -21.74
Consensus MFE -10.46
Energy contribution -12.22
Covariance contribution 1.76
Combinations/Pair 1.24
Mean z-score -2.19
Structure conservation index 0.48
SVM decision value 1.37
SVM RNA-class probability 0.947295
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17907033 102 + 27905053
ACUCAAAGUGAAUGGUUAAUUGAAUUUUGUGCAAUGCAAAACGCGUAAAUUAAAUUCAAAUUCAUAGUAAUUUAAUUAUUAGCUUUACUCUUGAUAGCGAAA
..(((((((((..((((((((((((((.((...((((.....))))..)).)))))))).....((((......))))))))))))))).))))........ ( -16.50)
>DroSec_CAF1 48275 77 + 1
ACUCAAAGUGAAUGAUUAAUUGAAUUUUGUGCAUUGCCAAGCGCGCAAAUUAAAUUCAAAU-------------------------AGUCUGGAUAGCGAAA
.......((....(((((.(((((((((((((.((....)).)))))....)))))))).)-------------------------))))......)).... ( -15.30)
>DroSim_CAF1 51828 102 + 1
ACUCAAAGUGAAUGAUUAAUUGAAUUUUGUGCAUUGCAAAACGCGCAAAUCAAAUUCAAAUGCGCAGUAAUUUGAUUAUUCACUUUACUCUGGAUAGUGAAA
..(((.(((((((((.((((..(((((((((((((((.......)))............)))))))).))))..)))).))).)))))).)))......... ( -25.20)
>DroEre_CAF1 51257 101 + 1
ACUCAAAGUGAAUGGUUAAUUGAAUUUCGUGCAUUGCAAAGCGCGCAAAUCAAAUUCAAAUGCAGUGUCAUUUGAUUAUUUGCA-GACCAUUGAUAACGAUA
.......((.(((((((..(((((((((((((........)))))......)))))))).(((((.(((....)))...)))))-))))))).))....... ( -25.70)
>DroYak_CAF1 51301 91 + 1
ACUCAAAGUGAAUGGUUAAUUGAAUUUUGUGCAUUGCAAAGCGCGUAAAUUGAAUUCAAAUGCAGUGUCAUUUGAUUAUUCGC------CUUG-----GGCA
.(((((.((((((((((((.(((.....((((........))))(((..(((....))).)))....))).))))))))))))------.)))-----)).. ( -26.00)
>consensus
ACUCAAAGUGAAUGGUUAAUUGAAUUUUGUGCAUUGCAAAGCGCGCAAAUUAAAUUCAAAUGCAGAGUAAUUUGAUUAUUCGC___ACUCUUGAUAGCGAAA
.......((((((((((((((((((((..(((...((.....)))))....))))))))............))))))))))))................... (-10.46 = -12.22 +   1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:47 2006