Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 17,893,514 – 17,893,606 |
Length | 92 |
Max. P | 0.970646 |
Location | 17,893,514 – 17,893,606 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 80.76 |
Mean single sequence MFE | -29.18 |
Consensus MFE | -18.09 |
Energy contribution | -18.09 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.60 |
Structure conservation index | 0.62 |
SVM decision value | 1.66 |
SVM RNA-class probability | 0.970646 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17893514 92 + 27905053 UUUAAUUAAAAUUGCCGGAGCCAUUAGGCAUUAACUGCAUUCUU--------UGCGGCAAUUUUCAAUUGAUUCGAUC---GCAGCAGUGGCAGUUGCGAUUG .(((((((((((((((...(((....))).......(((.....--------)))))))))))).))))))..(((((---(((((.......)))))))))) ( -34.00) >DroPse_CAF1 45604 86 + 1 UUUAAUUAAAAUUGCCAAAGCCAUUAGGCAUUAACUGCAUUCUUCGGAUCAUGGCGGCAAUUUUCAAUUGAUUUGAUC---UCU-CGG-------------UG .(((((((((((((((...(((....))).......((..((....)).....))))))))))).)))))).......---...-...-------------.. ( -22.50) >DroSim_CAF1 38359 92 + 1 UUUAAUUAAAAUUGCCGGAGCCAUUAGGCAUUAACUGCAUUCUU--------UGCGGCAAUUUUCAAUUGAUUCGAUC---GCAGCAGUGGCAGUUGCGAUUG .(((((((((((((((...(((....))).......(((.....--------)))))))))))).))))))..(((((---(((((.......)))))))))) ( -34.00) >DroEre_CAF1 36030 92 + 1 UUUAAUUAAAAUUGCCUGAGCCAUUAGGCAUUAACUGCAUUCUU--------UGCGGCAAUUUUCAAUUGAUUCGAUC---GCAGCACUGUCGGUUGCGAUUG .(((((((((((((((...(((....))).......(((.....--------)))))))))))).))))))..(((((---(((((.......)))))))))) ( -33.40) >DroAna_CAF1 31579 101 + 1 UUUAAUUAAAAUUGCCGCAGCCAUUAGGCAUUAACUGCAUUCUUGUGAUC--AGCGGCAAUUUUCAAUUGAUUCGAUCUCGGCAUCAGUGGCAGUUGCAAUUG .......(((((((((((.(((....))).......(((....)))....--.)))))))))))..(((((((((....))).)))))).((....))..... ( -28.70) >DroPer_CAF1 46638 86 + 1 UUUAAUUAAAAUUGCCAAAGCCAUUAGGCAUUAACUGCAUUCUUCGGAUCAUGGCGGCAAUUUUCAAUUGAUUUGAUC---UCU-CGG-------------UG .(((((((((((((((...(((....))).......((..((....)).....))))))))))).)))))).......---...-...-------------.. ( -22.50) >consensus UUUAAUUAAAAUUGCCGGAGCCAUUAGGCAUUAACUGCAUUCUU________UGCGGCAAUUUUCAAUUGAUUCGAUC___GCAGCAGUGGCAGUUGCGAUUG .(((((((((((((((...(((....))).......((...............))))))))))).))))))................................ (-18.09 = -18.09 + -0.00)
Location | 17,893,514 – 17,893,606 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 80.76 |
Mean single sequence MFE | -22.45 |
Consensus MFE | -16.04 |
Energy contribution | -16.04 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.26 |
Structure conservation index | 0.71 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.902662 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17893514 92 - 27905053 CAAUCGCAACUGCCACUGCUGC---GAUCGAAUCAAUUGAAAAUUGCCGCA--------AAGAAUGCAGUUAAUGCCUAAUGGCUCCGGCAAUUUUAAUUAAA (.((((((.(.......).)))---))).)....((((((((.((((((((--------.....))).......(((....)))...)))))))))))))... ( -24.80) >DroPse_CAF1 45604 86 - 1 CA-------------CCG-AGA---GAUCAAAUCAAUUGAAAAUUGCCGCCAUGAUCCGAAGAAUGCAGUUAAUGCCUAAUGGCUUUGGCAAUUUUAAUUAAA ..-------------.((-(..---(((...)))..)))((((((((((((((..((....))..(((.....)))...)))))...)))))))))....... ( -17.50) >DroSim_CAF1 38359 92 - 1 CAAUCGCAACUGCCACUGCUGC---GAUCGAAUCAAUUGAAAAUUGCCGCA--------AAGAAUGCAGUUAAUGCCUAAUGGCUCCGGCAAUUUUAAUUAAA (.((((((.(.......).)))---))).)....((((((((.((((((((--------.....))).......(((....)))...)))))))))))))... ( -24.80) >DroEre_CAF1 36030 92 - 1 CAAUCGCAACCGACAGUGCUGC---GAUCGAAUCAAUUGAAAAUUGCCGCA--------AAGAAUGCAGUUAAUGCCUAAUGGCUCAGGCAAUUUUAAUUAAA (.((((((.((....).).)))---))).)....((((((((.((((((((--------.....))).......(((....)))...)))))))))))))... ( -24.70) >DroAna_CAF1 31579 101 - 1 CAAUUGCAACUGCCACUGAUGCCGAGAUCGAAUCAAUUGAAAAUUGCCGCU--GAUCACAAGAAUGCAGUUAAUGCCUAAUGGCUGCGGCAAUUUUAAUUAAA (((((((....))....(((..((....)).))))))))((((((((((((--(((..((....))..))))..(((....))).)))))))))))....... ( -25.40) >DroPer_CAF1 46638 86 - 1 CA-------------CCG-AGA---GAUCAAAUCAAUUGAAAAUUGCCGCCAUGAUCCGAAGAAUGCAGUUAAUGCCUAAUGGCUUUGGCAAUUUUAAUUAAA ..-------------.((-(..---(((...)))..)))((((((((((((((..((....))..(((.....)))...)))))...)))))))))....... ( -17.50) >consensus CAAUCGCAACUGCCACUGCUGC___GAUCGAAUCAAUUGAAAAUUGCCGCA________AAGAAUGCAGUUAAUGCCUAAUGGCUCCGGCAAUUUUAAUUAAA ..................................((((((((.(((((((...............)).......(((....)))...)))))))))))))... (-16.04 = -16.04 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:46 2006