Locus 6780

Sequence ID 3R_DroMel_CAF1
Location 17,889,797 – 17,889,888
Length 91
Max. P 0.999437
window11007

overview

Window 7

Location 17,889,797 – 17,889,888
Length 91
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 94.36
Mean single sequence MFE -26.76
Consensus MFE -23.88
Energy contribution -23.80
Covariance contribution -0.08
Combinations/Pair 1.14
Mean z-score -2.46
Structure conservation index 0.89
SVM decision value 3.60
SVM RNA-class probability 0.999437
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17889797 91 - 27905053
AAUUAACUUUUACGAUGGUCAGGAGAGGCAAACGGUUCUAUAACCUUUAUAAGUGGUGGUGACUUGGC---AAAAUAUCGUUUUUCUUGACCAG
...............((((((((((((((....((((....)))).......((.(.(....).).))---........)))))))))))))). ( -26.50)
>DroSec_CAF1 31220 94 - 1
AAUUAACUUUUACGAUGGUCAGGAGAGGAAAGCGGUUCUAUAACCUUUAUAAGUGGCGGUGACUUGGCAGCAAAAUAUCGCUUUUCUUGACCAG
...............(((((((((((.......((((....)))).........(((((((..(((....)))..)))))))))))))))))). ( -25.70)
>DroSim_CAF1 34704 91 - 1
AAUUAACUUUUACGAUGGUCAGGAGAGGCAAACGGUUCUAUAACCUUUAUAAGUGGCGGUGACUUGGC---AAAAUAUCGUUUUUCUUGACCAG
...............((((((((((((((....((((....)))).......((.(.(....).).))---........)))))))))))))). ( -26.50)
>DroEre_CAF1 32265 91 - 1
AAUUAACUUUUACGAUGGUCAGGAGAGGCAAACGGUUCUAUAACCUUUGUAAGUGAUGGUGACUUGGC---AAAAUAUCGGUUUUCUUGACCAG
...............(((((((((((((((((.((((....)))))))))..((.(.(....).).))---..........)))))))))))). ( -25.80)
>DroYak_CAF1 32921 91 - 1
AAUUAACUUUUACGAUGGUCAGGAGAGGCAAACGGUUCCAUAACUUUUGUAAGUGGUGGUGACUUGGC---AAAAUAUCGCUUUUCUUGACCAG
...............((((((((((((((....((((((((.((((....)))).)))).)))).((.---......)))))))))))))))). ( -29.30)
>consensus
AAUUAACUUUUACGAUGGUCAGGAGAGGCAAACGGUUCUAUAACCUUUAUAAGUGGUGGUGACUUGGC___AAAAUAUCGCUUUUCUUGACCAG
...............((((((((((((((....((((....)))).......((.(.(....).).))...........)))))))))))))). (-23.88 = -23.80 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:44 2006