Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,450,924 – 2,451,021 |
Length | 97 |
Max. P | 0.991104 |
Location | 2,450,924 – 2,451,021 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.45 |
Mean single sequence MFE | -25.72 |
Consensus MFE | -24.12 |
Energy contribution | -24.15 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.03 |
Mean z-score | -1.25 |
Structure conservation index | 0.94 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.811670 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2450924 97 + 27905053 ----UUGGCGGAAAAAUGUCUUUUAAUUAGUGUUUAAUUGAAUUGCAAACUGGAAUUUUAAUCGAAAAUUGCAGCGGG-------------------UCGACUUUUCCGCCCCGUUUGGC ----..(((((((((.(((..(((((((((...)))))))))..)))..(((.((((((.....)))))).)))....-------------------.....)))))))))......... ( -25.50) >DroSec_CAF1 9924 97 + 1 ----UUGGCUGAAAAAUGUCUUUUAAUUAGUGUUUAAUUGAAUUGCAAACUGGAAUUUUAAUCGAAAAUUGCAGCGGG-------------------UCGACUUUUCCGCCCCGUUUGGC ----...((..((...(((..(((((((((...)))))))))..)))..(((.((((((.....)))))).)))((((-------------------.((.......)).))))))..)) ( -22.10) >DroSim_CAF1 6663 97 + 1 ----UUGGCGGAAAAAUGUCUUUUAAUUAGUGUUUAAUUGAAUUGCAAACUGGAAUUUUAAUCGAAAAUUGCAGCGGG-------------------UCGACUUUUCCGCCCCGUUUGGC ----..(((((((((.(((..(((((((((...)))))))))..)))..(((.((((((.....)))))).)))....-------------------.....)))))))))......... ( -25.50) >DroEre_CAF1 10975 97 + 1 ----UUGGCGGAAAAAUGUCUUUUAAUUAGUGUUUAAUUGAAUUGCAAACUGGAAUUUUAAUCGAAAAUUGCAGCGGG-------------------UCGACUUUUCCGCCCCGUUUGGC ----..(((((((((.(((..(((((((((...)))))))))..)))..(((.((((((.....)))))).)))....-------------------.....)))))))))......... ( -25.50) >DroYak_CAF1 11083 97 + 1 ----UUGGCGGAAAAAUGUCUUUUAAUUAGUGUUUAAUUGAAUUGCAAACUGGAAUUUUAAUCGAAAAUUGCAGCGGG-------------------UCGACUUUUCCGUCCCGUUUGGC ----..(((((((((.(((..(((((((((...)))))))))..)))..(((.((((((.....)))))).)))....-------------------.....)))))))))......... ( -22.80) >DroAna_CAF1 10511 120 + 1 GGCUUCGGCGGAAAAAUGUCUUUUAAUUAGUGUUUAAUUGAAUUGCAAACUGGAAUUUUAAUCGAAAAUUGCAGCUGGUGGGAGGCCGGGCUAGUUCUCGACUUUUCCGCCCCGUUAGAA ((....(((((((((..(((....(((((((..................(((.((((((.....)))))).)))(((((.....))))))))))))...))))))))))))))....... ( -32.90) >consensus ____UUGGCGGAAAAAUGUCUUUUAAUUAGUGUUUAAUUGAAUUGCAAACUGGAAUUUUAAUCGAAAAUUGCAGCGGG___________________UCGACUUUUCCGCCCCGUUUGGC ......(((((((((.(((..(((((((((...)))))))))..)))..(((.((((((.....)))))).)))............................)))))))))......... (-24.12 = -24.15 + 0.03)
Location | 2,450,924 – 2,451,021 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.45 |
Mean single sequence MFE | -21.75 |
Consensus MFE | -20.29 |
Energy contribution | -20.48 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.03 |
Mean z-score | -1.97 |
Structure conservation index | 0.93 |
SVM decision value | 2.25 |
SVM RNA-class probability | 0.991104 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2450924 97 - 27905053 GCCAAACGGGGCGGAAAAGUCGA-------------------CCCGCUGCAAUUUUCGAUUAAAAUUCCAGUUUGCAAUUCAAUUAAACACUAAUUAAAAGACAUUUUUCCGCCAA---- .((....))((((((((((((..-------------------...((((.((((((.....)))))).)))).........(((((.....)))))....)))..)))))))))..---- ( -22.70) >DroSec_CAF1 9924 97 - 1 GCCAAACGGGGCGGAAAAGUCGA-------------------CCCGCUGCAAUUUUCGAUUAAAAUUCCAGUUUGCAAUUCAAUUAAACACUAAUUAAAAGACAUUUUUCAGCCAA---- .((....))((((((((((((..-------------------...((((.((((((.....)))))).)))).........(((((.....)))))....))).)))))).)))..---- ( -17.60) >DroSim_CAF1 6663 97 - 1 GCCAAACGGGGCGGAAAAGUCGA-------------------CCCGCUGCAAUUUUCGAUUAAAAUUCCAGUUUGCAAUUCAAUUAAACACUAAUUAAAAGACAUUUUUCCGCCAA---- .((....))((((((((((((..-------------------...((((.((((((.....)))))).)))).........(((((.....)))))....)))..)))))))))..---- ( -22.70) >DroEre_CAF1 10975 97 - 1 GCCAAACGGGGCGGAAAAGUCGA-------------------CCCGCUGCAAUUUUCGAUUAAAAUUCCAGUUUGCAAUUCAAUUAAACACUAAUUAAAAGACAUUUUUCCGCCAA---- .((....))((((((((((((..-------------------...((((.((((((.....)))))).)))).........(((((.....)))))....)))..)))))))))..---- ( -22.70) >DroYak_CAF1 11083 97 - 1 GCCAAACGGGACGGAAAAGUCGA-------------------CCCGCUGCAAUUUUCGAUUAAAAUUCCAGUUUGCAAUUCAAUUAAACACUAAUUAAAAGACAUUUUUCCGCCAA---- ........((.((((((((((..-------------------...((((.((((((.....)))))).)))).........(((((.....)))))....)))..)))))))))..---- ( -18.20) >DroAna_CAF1 10511 120 - 1 UUCUAACGGGGCGGAAAAGUCGAGAACUAGCCCGGCCUCCCACCAGCUGCAAUUUUCGAUUAAAAUUCCAGUUUGCAAUUCAAUUAAACACUAAUUAAAAGACAUUUUUCCGCCGAAGCC .........(((((((((((((((((.((((..((.......)).))))...))))))))).........(((((.........))))).................))))))))...... ( -26.60) >consensus GCCAAACGGGGCGGAAAAGUCGA___________________CCCGCUGCAAUUUUCGAUUAAAAUUCCAGUUUGCAAUUCAAUUAAACACUAAUUAAAAGACAUUUUUCCGCCAA____ .((....))((((((((((((........................((((.((((((.....)))))).)))).........(((((.....)))))....)))..)))))))))...... (-20.29 = -20.48 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:04 2006