Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 17,883,442 – 17,883,556 |
Length | 114 |
Max. P | 0.818188 |
Location | 17,883,442 – 17,883,556 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 94.59 |
Mean single sequence MFE | -23.75 |
Consensus MFE | -20.50 |
Energy contribution | -20.62 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.09 |
Mean z-score | -1.93 |
Structure conservation index | 0.86 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.818188 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17883442 114 - 27905053 ACCAGGAGCCAAAAACCAAGUGCUCCUUAGAGCGUAAAAUCAUCGAAAUAUAAAUGCUCCUGAUCACAAAGGAAACAAGUGAAAUGAAAUGCAGACAAGCGAACACUGUACAAA ..(((((((............((((....))))(......)..............))))))).((((...(....)..)))).......(((((...........))))).... ( -23.40) >DroSec_CAF1 25001 114 - 1 ACCAGGAGCCAAAGACCAAGUGCUCCUUAGAGCGUAUAGUCAUUGAAAUAUAAAUGCUCCUGAUCACAAAGGAAACAUCUGAAAUGAAAUGCAGACAAGCGAACACUGUGCAAA ..((((((((((.(((.(..(((((....)))))..).))).)))..........)))))))..((((..(....).((((..........))))...........)))).... ( -26.80) >DroSim_CAF1 26871 114 - 1 ACCAGGAGCCAAAGACCAAGUGCUCCUUAGAGCGUAUAAUCAUCGAAAUAUAAAUGCUCCUGAUCACAAAGGAAACAACCGAAAUGAAAUGCAGACAAGCGAACACUGUGCAAA ..(((((((............((((....))))((((..........))))....)))))))..((((..(....).............(((......))).....)))).... ( -22.20) >DroYak_CAF1 26371 113 - 1 ACCAGGAGCCAAAGACCAAGUGCUCCUUAGAGCGUAUAAUCAUCGAAAUACAAAUGUUCCUGAUCACAAAGGGAACAAGUGAAA-GAAAUGCAGACAAGCGAACACUGUGCAAA ...(((((((.........).))))))......(((((....((......((..(((((((.........)))))))..))...-.....((......))))....)))))... ( -22.60) >consensus ACCAGGAGCCAAAGACCAAGUGCUCCUUAGAGCGUAUAAUCAUCGAAAUAUAAAUGCUCCUGAUCACAAAGGAAACAACUGAAAUGAAAUGCAGACAAGCGAACACUGUGCAAA ..(((((((............((((....))))((((..........))))....)))))))..((((..(....).............(((......))).....)))).... (-20.50 = -20.62 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:43 2006