Locus 6777

Sequence ID 3R_DroMel_CAF1
Location 17,877,224 – 17,877,321
Length 97
Max. P 0.997776
window11004

overview

Window 4

Location 17,877,224 – 17,877,321
Length 97
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 89.56
Mean single sequence MFE -17.50
Consensus MFE -16.62
Energy contribution -17.22
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.03
Structure conservation index 0.95
SVM decision value 2.93
SVM RNA-class probability 0.997776
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17877224 97 - 27905053
UACAAUUAAUUUGAGUUCAGCCACUGCGAUUCUCCUCAAUCGCAGCUGAAACAGAGUUCCUUGAAUAACAACAAAUUAAAAAAA-AAAAUGUGACUUC
.....((((((((..((((((...(((((((......))))))))))))).....((((...)))).....)))))))).....-............. ( -19.90)
>DroSec_CAF1 18849 96 - 1
UACAAUUAAUUUGAGUUCAGCCACUGCGAUUCUUCUCAAUCGCAGCUGAAACAGAGUUCCUUGAAUGACAACA--CUACUAAAAAAAAAUGCGACUUC
..(((..(((((...((((((...(((((((......)))))))))))))...)))))..)))..........--....................... ( -19.60)
>DroSim_CAF1 20698 95 - 1
UACAAUUAAUUUGAGUUCAGCCACUGCGAUUCUUCUCAAUCGCAGCUGAAACAGAGUUCCUUGAAUAACAACA--CUACUAAAA-AAAAUGCGACUUC
..(((..(((((...((((((...(((((((......)))))))))))))...)))))..)))..........--.........-............. ( -19.60)
>DroEre_CAF1 19631 90 - 1
UACAAUUAAUUUGAGUUCAGCAACUGCGAUUCUCCUCAAUCGCAGCAGAAACAGAGUUCCUUGAAUAAC-ACA------AACAU-AAAAUGUGACUUC
..(((..(((((...(((.((...(((((((......))))))))).)))...)))))..))).....(-(((------.....-....))))..... ( -16.20)
>DroYak_CAF1 20113 91 - 1
UACAAUUAAUUUGAGUUCAGCCACUGCGUUUCUCCGCAAUCGCAGCAGAAACAGAGUUCCUUGAAAAACAACA------AACAU-AAAAUGUGACUUC
..........(((..(((((..(((..(((((((.((....)).).))))))..)))...)))))...)))..------.....-............. ( -12.20)
>consensus
UACAAUUAAUUUGAGUUCAGCCACUGCGAUUCUCCUCAAUCGCAGCUGAAACAGAGUUCCUUGAAUAACAACA___UA_AAAAA_AAAAUGUGACUUC
..(((..(((((...((((((...(((((((......)))))))))))))...)))))..)))................................... (-16.62 = -17.22 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:42 2006