| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,877,032 – 17,877,124 |
| Length | 92 |
| Max. P | 0.991460 |
| Location | 17,877,032 – 17,877,124 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 78.05 |
| Mean single sequence MFE | -17.36 |
| Consensus MFE | -8.27 |
| Energy contribution | -9.35 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.73 |
| Structure conservation index | 0.48 |
| SVM decision value | 2.27 |
| SVM RNA-class probability | 0.991460 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17877032 92 - 27905053 GCAGAUACAAACAAUACGUGGCUGGCUAACUCAGCACGACAUUAAA-CAUUUAUGGCAUAUCAAAAACCAAAGCCAAAGAAACUGCCAA-AAA-U ((((............((((.((((.....))))))))........-..(((.((((...............)))).)))..))))...-...-. ( -17.76) >DroSec_CAF1 18658 92 - 1 GCAGAUACAAACAAUACGUGGCUGGCUAACUCAGCACGACAUUAAA-CAUUUAUGGCAUAUCAAAAACCAAAGCCAAAGAAACUGCCAA-AAA-A ((((............((((.((((.....))))))))........-..(((.((((...............)))).)))..))))...-...-. ( -17.76) >DroYak_CAF1 19917 93 - 1 GCAGAUACAAACAAAACGUGGCUGGCUAACUCAGCACGACAUUAAA-CAUUUAUGGCAUAUCAAAAACCAAAGCCAAAGUAACUGCCAAAAAA-U ((((.(((........((((.((((.....))))))))........-......((((...............))))..))).)))).......-. ( -20.26) >DroAna_CAF1 18181 80 - 1 GCAGCU---------ACGUGGCUGGCCAGCUCGGCACGACAUUAAA-CAUUUAUGGCGAAUCGAAAGCCAAAAAUCAAAAAA---CCAA-AAA-A .(((((---------....)))))(((.....)))...........-.((((.((((.........)))).)))).......---....-...-. ( -16.10) >DroPer_CAF1 21777 80 - 1 GCGGA--------AAACGUG----GCCAACGCAGCACGACAUUAAAGCAUUUAUGGCAUAUCAAAGGCAGACUCUA--AAAACUGCCAA-AAAAA (((..--------...))).----((((.....((...........)).....))))........(((((......--....)))))..-..... ( -14.90) >consensus GCAGAUACAAACAAAACGUGGCUGGCUAACUCAGCACGACAUUAAA_CAUUUAUGGCAUAUCAAAAACCAAAGCCAAAGAAACUGCCAA_AAA_A ................((((.((((.....))))))))...............(((((.........................)))))....... ( -8.27 = -9.35 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:41 2006