| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,872,662 – 17,872,758 |
| Length | 96 |
| Max. P | 0.739723 |
| Location | 17,872,662 – 17,872,758 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 80.76 |
| Mean single sequence MFE | -23.69 |
| Consensus MFE | -17.68 |
| Energy contribution | -17.78 |
| Covariance contribution | 0.10 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.739723 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17872662 96 + 27905053 AUUCAUAGUCGUCGCAUUUUGCACAGUUGAAGUGUGCCUAGACUGUGUGAAUACAAAAAA----AAAAAU-GACGACAAGAC--------GUCAAGAGGCCCGAGCAAA .(((...(((((((...((..(((((((..((.....)).)))))))..)).........----.....)-)))))).....--------(((....)))..))).... ( -21.63) >DroPse_CAF1 16170 85 + 1 AUUCAUAGUCGUCGCAUUUCGCACAGUUGAAGUGUGCCUAGACUGUGGAAAA-----CACUACUGGACCUGGACUGUGCGAC--------GUCAG---GCC-------- .(((((((((..(((((((((......)))))))))....)))))))))...-----.......((.((((.((........--------)))))---)))-------- ( -27.20) >DroSec_CAF1 14246 108 + 1 AUUCAUAGUCGUCGCAUUUUGCACAGUUGAAGUGUGCCUAGACUGUGUGAAUAAAAAAAAAACAAAAAAU-GACGACAAGACGUCAAGACGUCAAGAGGCCCGAGCAAA .(((...(((((((...((..(((((((..((.....)).)))))))..))..................)-))))))..(((((....)))))..)))((....))... ( -27.80) >DroSim_CAF1 16080 100 + 1 AUUCAUAGUCGUCGCAUUUUGCACAGUUGAAGUGUGCCUAGACUGUGUGAAUAAAAAAAAAACAAAAAAU-GACGACAAGAC--------GUCAAGAGGCCCGAGCAAA ........(((..((..((..(((((((..((.....)).)))))))..))..................(-((((......)--------))))....)).)))..... ( -21.40) >DroEre_CAF1 14998 89 + 1 AUUCAUAGUCGUCGCAUUUUGCACAGUUGAAGUGUGCCUAGACUGUGUGAAUAAA-----------AAAU-GACGACCAGAC--------GUCAAGAGGCCCGAGCAAA .(((...(((((((...((..(((((((..((.....)).)))))))..))....-----------...)-)))))).....--------(((....)))..))).... ( -22.30) >DroYak_CAF1 15287 90 + 1 AUUCAUAGUCGUCGCAUUUUGCACAGUUGAAGUGUGCCUAGACUGUGUGAAUAAA----------AAAAU-GACGACCAGAC--------GUCAAGAGGCCCGAGCAAA .(((...(((((((((((((((((((((..((.....)).)))))))).......----------)))))-).))))..)))--------(((....)))..))).... ( -21.81) >consensus AUUCAUAGUCGUCGCAUUUUGCACAGUUGAAGUGUGCCUAGACUGUGUGAAUAAA__AAA____AAAAAU_GACGACAAGAC________GUCAAGAGGCCCGAGCAAA .......((((((....((..(((((((..((.....)).)))))))..))....................))))))..((((......))))................ (-17.68 = -17.78 + 0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:40 2006