| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,862,604 – 17,862,724 |
| Length | 120 |
| Max. P | 0.505885 |
| Location | 17,862,604 – 17,862,724 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.33 |
| Mean single sequence MFE | -41.38 |
| Consensus MFE | -24.68 |
| Energy contribution | -24.80 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.60 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.505885 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17862604 120 + 27905053 CGGCGUGAUCAUCAUCUCACCUACCCGAGAGUUGUCCAUGCAAACUUUCGGUGUGCUCAAAGAGCUGAUGGCACACCACCAUCACACUUAUGGCUUGGUAAUGGGCGGCUCCAAUCGGCA .((.(.(((....))).).))...(((((((((((((((..........((((((((((......)))..)))))))((((...((....))...)))).)))))))))))...)))).. ( -41.30) >DroVir_CAF1 3387 120 + 1 GGGCGUUAUUAUUAUCUCGCCCACACGGGAGCUGUCCAUGCAAACGUUUGGUGUGCUCAAAGAGCUAAUGGCACAUCAUCAUCACACCUAUGGCUUGGUCAUGGGUGGCUCCAAUCGUCA (((((..((....))..))))).....(((((..((((((........((((((((.((.........)))))))))).......(((........)))))))))..)))))........ ( -44.00) >DroGri_CAF1 3342 120 + 1 CGGCGUCAUUAUCAUCUCGCCCACGCGGGAGUUGUCGAUGCAAACGUUUGGUGUGCUCAAGGAGCUGAUGGCGCAUCAUCAUCACACCUACGGCUUGGUUAUGGGCGGCUCCAAUCGUCA .((((............(((....)))(((((((((.((((((.(((..(((((((((...))))((((((....))))))..))))).)))..)))..))).)))))))))...)))). ( -41.90) >DroWil_CAF1 3507 120 + 1 UGGUGUCAUUAUUAUCUCACCAACACGUGAAUUGUCCAUGCAAACCUUCGGUGUCCUGAAAGAAUUGAUGGCCCAUCAUCAUCAUACCUAUGGUUUGGUCAUGGGUGGUUCCAAUCGUCA (((((..((....))..)))))..(((.((((..((((((((((((...(((((..(((......(((((...))))))))..)))))...))))))..))))))..))))....))).. ( -36.20) >DroMoj_CAF1 3705 120 + 1 GGGCGUCAUUAUCAUCUCGCCCACACGCGAGUUGUCCAUGCAGACGUUCGGUGUGCUCAAGGAGCUGAUGGCACAUCAUCAUCAUACCUACGGCUUAGUCAUGGGUGGCUCAAAUCGUCA (((((............)))))......((((..(((((((((.(((..(((((((((...))))((((((....))))))..))))).))).))..).))))))..))))......... ( -41.70) >DroAna_CAF1 4648 120 + 1 UGGAGUGAUCAUCAUUUCCCCAACGAGAGAGCUGUCCAUGCAGACGUUUGGGGUUUUGAAGGAACUGAUGGCGCAUCACCACCACACGUAUGGCUUGGUGAUGGGCGGAUCAAACCGACA .((..(((((.(((...(((((((....).(((((....)))).)..))))))...)))...........((.(((((((((((......)))..)))))))).)).)))))..)).... ( -43.20) >consensus CGGCGUCAUUAUCAUCUCGCCCACACGAGAGUUGUCCAUGCAAACGUUCGGUGUGCUCAAAGAGCUGAUGGCACAUCAUCAUCACACCUAUGGCUUGGUCAUGGGCGGCUCCAAUCGUCA (((((............)))))......((((((((((((.........((((((((............))))))))((((...(......)...))))))))))))))))......... (-24.68 = -24.80 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:35 2006