Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,450,768 – 2,450,859 |
Length | 91 |
Max. P | 0.716266 |
Location | 2,450,768 – 2,450,859 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 81.15 |
Mean single sequence MFE | -39.70 |
Consensus MFE | -23.55 |
Energy contribution | -24.03 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.20 |
Mean z-score | -1.99 |
Structure conservation index | 0.59 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.716266 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2450768 91 - 27905053 ----------CU----ACCCCGGAGAAAUGUCCGU---UUUGUCUCG-GGCUUUUCCCCGGGGAUCUGG-----GGCUGUCAAAGCGGCAACGGAAGUUAGGCCACCCACUCGG ----------..----.((((((.((((.(((((.---.......))-))).)))).))))))...(((-----((((.....)))(((.((....))...))).))))..... ( -42.80) >DroSec_CAF1 9773 92 - 1 ----------CU----CCCCCGGAGAAAUGUCCGU---UUUGUCUCG-GGCUUUUCCCCGGGGAUCUGGG----GGCUGUCAAAGCGGCAGCGGAAGUUAGGCCACCCACUCGG ----------..----.((((((.((((.(((((.---.......))-))).)))).))))))...((((----(((((((.....)))(((....))).)))).))))..... ( -43.20) >DroSim_CAF1 6506 92 - 1 ----------CU----CCCCCGGAGAAAUGUCCGU---UUUGUCUCG-GGCUUUUCCCCGGGGAUCUGGG----GGCUGUCAAAGCGGCAGCGGAAGUUAGGCCACCCACUCGG ----------..----.((((((.((((.(((((.---.......))-))).)))).))))))...((((----(((((((.....)))(((....))).)))).))))..... ( -43.20) >DroEre_CAF1 10824 92 - 1 ----------CU----UCCCCAGAGAAAUGUUCAU---UUUGUCUCU-GGAUUUGCCCCGGGGAUCUGGG----GGCUGUCAAAGCGGCAGCGGAAGUUGGGCCACCCACUCGG ----------((----((((((((((...(.....---)...)))))-)).....((((((....)))))----)((((((.....))))))))))).((((...))))..... ( -38.00) >DroAna_CAF1 10324 114 - 1 UUCCAGCUCUCUAUGGACUCUUGGCAAAUUUUCUUUUUUUUGUCUCAGGGGCUUUCCCCAGGGAUCUCGGCUCGGCCUGUCAAAGUGGCAGCGGAUGUUAGGCCACCCACUCGG .((((........)))).....((((((..........))))))...((((....)))).(((..((..((((.((.((((.....)))))).)).))..))...)))...... ( -31.30) >consensus __________CU____ACCCCGGAGAAAUGUCCGU___UUUGUCUCG_GGCUUUUCCCCGGGGAUCUGGG____GGCUGUCAAAGCGGCAGCGGAAGUUAGGCCACCCACUCGG .................((((((.((((.(((................))).)))).))))))...((((.....(((.....)))(((.((....))...))).))))..... (-23.55 = -24.03 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:03 2006