| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,853,750 – 17,853,854 |
| Length | 104 |
| Max. P | 0.536968 |
| Location | 17,853,750 – 17,853,854 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 79.90 |
| Mean single sequence MFE | -48.98 |
| Consensus MFE | -31.86 |
| Energy contribution | -32.12 |
| Covariance contribution | 0.26 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.536968 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17853750 104 - 27905053 AUCGCUGCUGGAAGGCAGCAGGCAGGGCAUUCGUCUGCGCCUGGAGUAGA---UUGGG---CGACUG-UGUGGCGCGGCUGACGAGCCGCACCAGUCCUACGCGGAACACG .((((((((....)))).(((((.((((....))))..)))))..(((((---(((((---(.((..-.)).))((((((....)))))).))))).))))))))...... ( -45.60) >DroVir_CAF1 1689 107 - 1 ACUUCUGCAUGAAGGCGGCGGGCAAUGCAUUCGCCUGGGCCUGCAGCAGU---GUGCCAGGCG-CGGUUGCGCCACGGCUAACCAGCCGCACGAGGCCUACACGAAACACG .((((.....))))((.((((((...((....))....)))))).)).((---(((((.((((-(....))))).(((((....))))).....)))..))))........ ( -45.40) >DroPse_CAF1 1715 107 - 1 ACUUCUGCUGGAAGGCGGCGGGCAAGGCGUUCGUCUGGGCCUGCAGCAGGCCGUUGGG---GG-CAGUGGCGCCGCGGCUGACGAGCCGCACCAGGCCAACACGAAACACG .((((.....))))((.((((((.((((....))))..)))))).)).((((....((---((-(......)))((((((....)))))).)).))))............. ( -50.50) >DroGri_CAF1 2144 107 - 1 AUUUUUGCAUGAAGGCGGCGGGCAAAGCAUUCGUCUGCGCCUGCAGCAGA---GUGGCGGGCG-CAGUGGCGCCGCGGCUGGCUAGCCGCACCAGGCCAACACGAAACACG ..((((((.((.(((((.(((((.........)))))))))).)))))))---)((((.((((-(....)))))((((((....)))))).....))))............ ( -48.60) >DroAna_CAF1 1809 104 - 1 ACCGCUGCUGGAAGGCGGCAGGCAGGGCGUUCGCCUGGGCUUGCAGCAGA---GUGGG---CGACUG-GGAGGCGCGGCUGACAAGCCGCACCAGUCCAACGCGGAAUACG .((((.(((.(...((.((((((.((((....))))..)))))).))...---.).))---)(((((-(.....((((((....)))))).))))))....))))...... ( -53.30) >DroPer_CAF1 2666 107 - 1 ACUUCUGCUGGAAGGCGGCGGGCAAGGCGUUCGUCUGGGCCUGCAGCAGGCCGUUGGG---GG-CAGUGGCGCCGCGGCUGACGAGCCGCACCAGGCCAACACGAAACACG .((((.....))))((.((((((.((((....))))..)))))).)).((((....((---((-(......)))((((((....)))))).)).))))............. ( -50.50) >consensus ACUUCUGCUGGAAGGCGGCGGGCAAGGCAUUCGUCUGGGCCUGCAGCAGA___GUGGG___CG_CAGUGGCGCCGCGGCUGACGAGCCGCACCAGGCCAACACGAAACACG .((((.....))))((.((((((.((((....))))..)))))).))...................(((..(((((((((....))))))....)))...)))........ (-31.86 = -32.12 + 0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:29 2006