Locus 6766

Sequence ID 3R_DroMel_CAF1
Location 17,849,530 – 17,849,641
Length 111
Max. P 0.609310
window10985

overview

Window 5

Location 17,849,530 – 17,849,641
Length 111
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 76.87
Mean single sequence MFE -29.97
Consensus MFE -14.76
Energy contribution -18.07
Covariance contribution 3.31
Combinations/Pair 1.08
Mean z-score -1.88
Structure conservation index 0.49
SVM decision value 0.15
SVM RNA-class probability 0.609310
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17849530 111 + 27905053
GCCAUCACUGGCAUCUCCUGCUCAUCACCAGCUCCUGCAGCUGCCGGGUGUGCUAGCAGCCACAGGAACACCAUCAAACACACGCAACGUGACCAAAUUCUCGCUGGUGAA
((((....))))............(((((((((((((..(((((..(.....)..)))))..))))).............((((...))))...........)))))))). ( -40.50)
>DroPse_CAF1 3694 102 + 1
CCAUACACUAGCACCAGC--CUCGUU-GCAGCUCCUUCAGUUGCCCGCUCU---GGGGACUCCAGGAACGCCACC---CGUACGCAGCGUUACCAAAUUCUCGCUCAUCAA
.........(((.((((.--..((..-((((((.....)))))).))..))---))........(((((((..(.---.....)..))))).))........)))...... ( -22.30)
>DroSec_CAF1 3975 111 + 1
GCCAUCACUGGCAUCUCCUGCUCAUCACCAGCUCCUCCAGCUGCCGGGAGUACUCGCUGCCACAGGAACACCAUCAAACACACGCAACGUAACCAAGUUCUCGCUGGUGAA
((((....))))............((((((((((((...((.((.((.....)).)).))...))))................(.(((........))))..)))))))). ( -29.80)
>DroSim_CAF1 4307 111 + 1
GCCAUCACUGGCAUCUCCUGCUCAUCACCAGCUCCUCCAGCUGCCGGGAGUACUAGCUGCCACUGGAACACCAUCAAACACACGCAACGUAACCAAGUUCUCGCUGGUGAA
((((....))))............((((((((...(((((.....((.(((....))).)).)))))................(.(((........))))..)))))))). ( -30.20)
>DroEre_CAF1 4025 111 + 1
GCCAUGCCUGGCAUCUCCUGCUCAUCACCAGCUCCUCCAGCUGCCGGGAGUACUAACAGCCACAGGAUCACCAUCAAACACACGCAACGUGACCAAAUUCUCGCUGGUGAA
((((....))))............((((((((((((...((((..((.....))..))))...)))).............((((...))))...........)))))))). ( -32.80)
>DroPer_CAF1 3657 102 + 1
CCAUACACUAGCACCAGC--CUCGUU-GCAGCUGCUUCAGUUGCCCGCUCU---GGGAACUCCAGGAACGCCACC---CGUACGCAGCGUUACCAAAUUCUCGCUCAUCAA
.........(((.((((.--..((..-(((((((...))))))).))..))---))........(((((((..(.---.....)..))))).))........)))...... ( -24.20)
>consensus
GCCAUCACUGGCAUCUCCUGCUCAUCACCAGCUCCUCCAGCUGCCGGGAGUACUAGCAGCCACAGGAACACCAUCAAACACACGCAACGUAACCAAAUUCUCGCUGGUGAA
(((......)))............((((((((((((...(((((.((.....)).)))))...))))..............(((...)))............)))))))). (-14.76 = -18.07 +   3.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:23 2006