Locus 6765

Sequence ID 3R_DroMel_CAF1
Location 17,849,395 – 17,849,503
Length 108
Max. P 0.902804
window10984

overview

Window 4

Location 17,849,395 – 17,849,503
Length 108
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 71.73
Mean single sequence MFE -38.08
Consensus MFE -14.42
Energy contribution -14.03
Covariance contribution -0.39
Combinations/Pair 1.24
Mean z-score -2.18
Structure conservation index 0.38
SVM decision value 1.03
SVM RNA-class probability 0.902804
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17849395 108 - 27905053
GUCAUC---------AAAGUGGCACGUUGUGUCCGCUGGACCAGAGGAACCAACGAAGAUGCAGCCGGCGACUGGCGGCAAACGCUUCGCAGCGCUGAAAGUUAA-GAACAAUUAAAG
(((((.---------...))))).(((((..(((.(((...))).)))..)))))..(((.(((((.((((..((((.....)))))))).).))))...)))..-............ ( -34.40)
>DroPse_CAF1 3558 106 - 1
GUCAUUAGCUGGCCAAAACAGGCACGUUGUGUCUGUUGCACCAGCGGCG------------CCACCGGCGGAACGCGACACACGCCGCGCAGGGCUAUAAAACAAACCAUAAAUGAAA
.(((((.(((((....(((((((((...)))))))))...)))))(((.------------((.((((((............))))).)..)))))...............))))).. ( -36.70)
>DroSec_CAF1 3840 108 - 1
GUCAUU---------AAAGUGGCACGUUGUGUCCGCUGCACCAGAGGAAUCAACGAAGCUGCAGCCGGCGACUGGCGGCAAACGCUUCGCAGCGCUGGAAGUUAA-GGACAAUUAAAU
(((.((---------((.(..((.(((((..(((.(((...))).)))..)))))..))..)..((((((.((((.(((....))).).)))))))))...))))-.)))........ ( -39.30)
>DroSim_CAF1 4172 108 - 1
GUCAUC---------AAAGUGGCACGUUGUGUCCGCUGCACCAGAGGAAUCAACGAAGCUGCAGCCGGCGACUGGCGGCAAACGCUUCGCAGCGCUGGAGGUUAA-GGACAAUUAAAU
(((...---------...(..((.(((((..(((.(((...))).)))..)))))..))..)..((((((.((((.(((....))).).))))))))).......-.)))........ ( -38.50)
>DroYak_CAF1 3865 108 - 1
GUCAUC---------AAAGUGGCACGUUGUGUCCGCUGGACCAAAGGAAUCAACGAAGAUGCCGCCGGCGACUGGCGGCAAACGCUUCUCAGCGCUGGAAGUAAU-GGUCAUUUAAAA
......---------.(((((((.(((((..((((((((.((...)).......((((.(((((((((...)))))))))....)))))))))...)))..))))-)))))))).... ( -39.10)
>DroPer_CAF1 3521 106 - 1
GUCAUUAGCUGGCCAAAACAGGCACGUUGUGUCUGUUGCGCCAGCGGCG------------CCACCGGCGGAACGCGACACACGCCGCGCAGGGCUAUAAAACAAACCAUAAAUGAAA
.(((((.((((((...(((((((((...)))))))))..))))))(((.------------((.((((((............))))).)..)))))...............))))).. ( -40.50)
>consensus
GUCAUC_________AAAGUGGCACGUUGUGUCCGCUGCACCAGAGGAAUCAACGAAG_UGCAGCCGGCGACUGGCGGCAAACGCUUCGCAGCGCUGGAAGUUAA_GGACAAUUAAAA
....................(((((...)))))((((((......((.................))((((............))))..))))))........................ (-14.42 = -14.03 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:22 2006