Locus 6764

Sequence ID 3R_DroMel_CAF1
Location 17,848,782 – 17,848,876
Length 94
Max. P 0.593315
window10983

overview

Window 3

Location 17,848,782 – 17,848,876
Length 94
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 94.92
Mean single sequence MFE -35.32
Consensus MFE -30.60
Energy contribution -30.84
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.26
Structure conservation index 0.87
SVM decision value 0.12
SVM RNA-class probability 0.593315
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17848782 94 - 27905053
GACGACGAGC-AGCACGCAGGACUCGUGUGCGUGUGCGUGGGAGUGUGGGGAAUGGAAGAGGAAGCAGCAGCACUGGCCAGCCAUUCACCCACCA
..(.(((.((-(((((((.......)))))).))).))).)..(.(((((((((((....((...(((.....))).))..)))))).)))))). ( -37.50)
>DroSec_CAF1 3227 94 - 1
GACGACGAGC-AGCACGCAGGACACGUGUGCGUGUGCGUGUGAGUGUGGGGGAUGGAAGAGGAAGCAGCAGCACUGGCCAGCCAUUCACCCACCA
........((-.((((((...(((((....)))))))))))..))(((((((((((....((...(((.....))).))..)))))).))))).. ( -35.60)
>DroSim_CAF1 3561 94 - 1
GACGACGAGC-AGCACGCAGGACACGUGUGCGUGUGCGUGUGAGUGUGGGGGAUGGAAGAGGAAGCAGCAGCACUGGCCAGCCAUUCACCCACCA
........((-.((((((...(((((....)))))))))))..))(((((((((((....((...(((.....))).))..)))))).))))).. ( -35.60)
>DroEre_CAF1 3275 89 - 1
GACGACCAACAAGCACGCAGGACACGUGUG------CGUGUGAGUGUGGGGGAUGGAAGAGGAAGCAGCAGCACUGGCCAGCCAUUCACCCACCA
....((..(((.((((((.......)))))------).)))..))(((((((((((....((...(((.....))).))..)))))).))))).. ( -32.30)
>DroYak_CAF1 3228 94 - 1
GACGACGAGC-AGCACGCAGGACACGUGUGCGUGUGCGUGUGAGUGUGGGGGAUGGAAGAGGAAGCAGCAGCACUGGCCAGCCAUUCACCCACCA
........((-.((((((...(((((....)))))))))))..))(((((((((((....((...(((.....))).))..)))))).))))).. ( -35.60)
>consensus
GACGACGAGC_AGCACGCAGGACACGUGUGCGUGUGCGUGUGAGUGUGGGGGAUGGAAGAGGAAGCAGCAGCACUGGCCAGCCAUUCACCCACCA
....(((.....((((((.......)))))).....)))....(.(((((((((((....((...(((.....))).))..)))))).)))))). (-30.60 = -30.84 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:21 2006