Locus 6763

Sequence ID 3R_DroMel_CAF1
Location 17,846,559 – 17,846,679
Length 120
Max. P 0.799655
window10982

overview

Window 2

Location 17,846,559 – 17,846,679
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.17
Mean single sequence MFE -43.74
Consensus MFE -24.62
Energy contribution -25.68
Covariance contribution 1.06
Combinations/Pair 1.41
Mean z-score -2.07
Structure conservation index 0.56
SVM decision value 0.61
SVM RNA-class probability 0.799655
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17846559 120 - 27905053
CAGCGGGAGACCGAUCUGACGCGAAGCUUUAAGCGUGAACUUGAGGAUAAGCUGGCGACCGAAAAGGCCAACUAUAAGUUACAAUUGGCCGGGAUGCUCGGCAAGCUGCGCGGAAUGGAC
((((((....)))..))).((((.(((((((((......)))))......(((((((.((.....((((((.............)))))).)).))).)))).)))).))))........ ( -40.02)
>DroVir_CAF1 2823 120 - 1
CAACGAGAAACGGAUAUGACGCGCGCUUUUCAGCGCGAGCUGGAUGAAAAACUAGCUGCCGAAAAAGCCAGCUACAAACUCCAGCUGGCUGCUAUGCUGGGCAAGCUGCGCGGAAUGGAU
..............(((..(((((((((((((((((.((((((.(....).))))))))......((((((((.........)))))))).....)))))).)))).)))))..)))... ( -47.00)
>DroGri_CAF1 2542 120 - 1
CAGCGGGAAACGGAACUGACGCGCUCCUUCAAGCGCGAGUUGGACGACAAGUUGGCCGCCGAGAAGGCCAACUACAAACUUCAGCUGGCUGCUAUGCUGGGCAAGCUACGCGGCAUGGAU
((((.(....)........((((((......))))))(((((((.....((((((((........))))))))......))))))).))))((((((((.(.......).)))))))).. ( -47.80)
>DroWil_CAF1 966 120 - 1
CAGCGUGAAACCGAUUUGACACGGAAUUUUAAGCGCGAAUUGGAGGACAAGUUGGCCACCGAAAAGGCCAACUAUAAGCUUCAACUGGCUGCCAUGCUUGGAAAAUUACGUGGCAUGGAU
((((.((((.((((((((.(.(..........).)))))))))......((((((((........))))))))......))))....))))(((((((((........)).))))))).. ( -38.30)
>DroMoj_CAF1 2428 120 - 1
CAGCGAGAAAGCGAUUUGACGCGCGCUUUCCAGCGUGAAAUGGACGAUAAAUUGGCUGCUGAAAAGGCCAACUACAAGCUCCAACUGGCUGCUAUGCUUGGCAAGCUACGCGGAAUGGAU
.((((.....(((......))).)))).((((.((((...(((((......((((((........))))))......).))))..(((((((((....)))).)))))))))...)))). ( -37.10)
>DroAna_CAF1 979 120 - 1
CAGCGGGAGACCGAUCUUACUCGCAGCUUCAAGCGGGAGCUGGAAGACAAGCUGGCCACCGAGAAGGCCAACUACAAGCUUCAGCUGGCCGCUAUGCUGGGCAAGCUGCGAGGCAUGGAU
...(((....)))((((..(((((((((...(((((.(((((.(((...((.(((((........))))).)).....))))))))..))))).(((...))))))))))))....)))) ( -52.20)
>consensus
CAGCGGGAAACCGAUCUGACGCGCACCUUCAAGCGCGAACUGGACGACAAGCUGGCCACCGAAAAGGCCAACUACAAGCUUCAACUGGCUGCUAUGCUGGGCAAGCUACGCGGAAUGGAU
...................((((........(((((.(((((((.....((((((((........))))))))......))))))).)).)))..(((.....)))..))))........ (-24.62 = -25.68 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:20 2006