Locus 6762

Sequence ID 3R_DroMel_CAF1
Location 17,843,919 – 17,844,010
Length 91
Max. P 0.515058
window10981

overview

Window 1

Location 17,843,919 – 17,844,010
Length 91
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 83.68
Mean single sequence MFE -18.70
Consensus MFE -15.45
Energy contribution -15.58
Covariance contribution 0.13
Combinations/Pair 1.09
Mean z-score -1.41
Structure conservation index 0.83
SVM decision value -0.04
SVM RNA-class probability 0.515058
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17843919 91 - 27905053
AACAUCAAACUUAUCUGUAUCGUAAAGAUAUGUGAUAAGUGGCUGCUACUUGAAAAUUUUAGUA--GAUUUCGGGAUUUCCG-UUUUAACUGAA------------
....(((.(((((((((((((.....)))))).)))))))..((((((..(....)...)))))--)....(((.....)))-.......))).------------ ( -18.40)
>DroSec_CAF1 132187 87 - 1
AACAUCAAACUUAUCUGUAUCGUAAAGAUAUGUGAUAAGUGGC---UACUUGAAAAUAUUAGC---GUUUUCGGGAUUUCCG-UUUUAACUAAA------------
(((.....(((((((((((((.....)))))).)))))))((.---.((((((((((......---))))))))).)..)))-)).........------------ ( -19.10)
>DroSim_CAF1 144706 88 - 1
AACAUCAAACUUAUCUGUAUCGUAAAGAUAUGUGAUAAGUGGC---UACUUGAAAAUAUUAGUA--GUUUUCGGGAUUUCCG-UUUUAACUAAA------------
(((.....(((((((((((((.....)))))).)))))))((.---.((((((((((.......--))))))))).)..)))-)).........------------ ( -18.80)
>DroYak_CAF1 139909 103 - 1
AACAUUAAACUUAUCUGUAUCGUAAAGAUAUGUGAUAAGUGGC---UACUUGAAAAAGUUAGUAGAGUUUUUGAGAUUUUCCCGUUUAACUAUAUUUUUGGAUCUU
........(((((((((((((.....)))))).))))))).((---(((((....))).)))).........(((((((....((........))....))))))) ( -18.50)
>consensus
AACAUCAAACUUAUCUGUAUCGUAAAGAUAUGUGAUAAGUGGC___UACUUGAAAAUAUUAGUA__GUUUUCGGGAUUUCCG_UUUUAACUAAA____________
........(((((((((((((.....)))))).)))))))........(((((((((.........)))))))))............................... (-15.45 = -15.58 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:19 2006