Locus 6760

Sequence ID 3R_DroMel_CAF1
Location 17,833,708 – 17,833,800
Length 92
Max. P 0.805829
window10979

overview

Window 9

Location 17,833,708 – 17,833,800
Length 92
Sequences 3
Columns 93
Reading direction forward
Mean pairwise identity 88.56
Mean single sequence MFE -12.61
Consensus MFE -9.83
Energy contribution -10.50
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.55
Structure conservation index 0.78
SVM decision value 0.63
SVM RNA-class probability 0.805829
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17833708 92 + 27905053
AGGCUUUAAA-ACGGAAAUUUGAAAACAAAAUUUCAAGAUUUCGGCUUAAAAGUAAAAAGAGAGACAAAAAGAAAAACAAAACAAAUUUUGAG
..(((((((.-.(((((.(((((((......))))))).)))))..)).))))).......................(((((....))))).. ( -13.40)
>DroSim_CAF1 134593 85 + 1
AGGCUUUAAA-ACGGAAAUUUGAAUCCAAAAUUUCAAGAUUUCGGCUUAAAAGUAAAAAGAGAUA-------AAAAACAAAACAAAUUUUGAG
..(((((((.-.(((((.((((((........)))))).)))))..)).)))))...........-------.....(((((....))))).. ( -13.10)
>DroEre_CAF1 128355 85 + 1
AGGCUUUAAAAAGGGAAAUUUGAAAACCAAAUUUCAAGAUUUCGGCUUAAAAGUAAAAAGAGACA-------AAAGA-AAAACAAAUUUUGAG
(((((.........((((((((.....))))))))........)))))...............((-------(((..-........))))).. ( -11.33)
>consensus
AGGCUUUAAA_ACGGAAAUUUGAAAACAAAAUUUCAAGAUUUCGGCUUAAAAGUAAAAAGAGACA_______AAAAACAAAACAAAUUUUGAG
..(((((.....(((((.(((((((......))))))).))))).....)))))....................................... ( -9.83 = -10.50 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:17 2006