Locus 676

Sequence ID 3R_DroMel_CAF1
Location 2,445,731 – 2,445,851
Length 120
Max. P 0.571157
window1069

overview

Window 9

Location 2,445,731 – 2,445,851
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 92.39
Mean single sequence MFE -41.77
Consensus MFE -35.63
Energy contribution -36.38
Covariance contribution 0.75
Combinations/Pair 1.14
Mean z-score -1.53
Structure conservation index 0.85
SVM decision value 0.07
SVM RNA-class probability 0.571157
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2445731 120 - 27905053
GGGACGAAGACGAGGUCGUUCAGCAGGGGCGACAAUCUCAAAUGGGAAUUAGCGCGGUCUAUAAUAAGGAUCGCCGACGCAAUCGCCGGGCGCACAAUCAUUGGCCUGUGUAAACCUGCA
.((((((........)))))).((((((((((...((((....))))....(((((((((.......)))))))....))..)))))((((.((.......)))))).......))))). ( -42.60)
>DroSec_CAF1 4724 120 - 1
GGGACGAAGACGAGGUCGUUCAGCAGGGGCGACAAUCUCAAAUGGGAAUUAGCGCGGUCUGUAAUAAGGAUCGCCGACGCAAUCGCCGGGCGCACAAUCAUUGGCCUGUGUAAACCUGCA
.((((((........)))))).((((((((((...((((....))))....(((((((((.......)))))))....))..)))))((((.((.......)))))).......))))). ( -42.90)
>DroSim_CAF1 1502 120 - 1
GGGACGAAGACGAGGUCGUUCAGCAGGGGCGACAAUCUCAAAUGGGAAUUAGCGCGGUCUGUAAUAAGGAUCGCCGACGCAAUCGCCGGGCGCACAAUCAUUGGCCUGUGUAAACCUGCA
.((((((........)))))).((((((((((...((((....))))....(((((((((.......)))))))....))..)))))((((.((.......)))))).......))))). ( -42.90)
>DroEre_CAF1 5917 119 - 1
GGGACGAAAC-CGGGUCGUUCAGCGGGGGCGACAAUCUCAAAUGGGAAUUAGCGCGGUCUGUAAUAAGGAUCGCCGAGGCAAUCGCCGGGUGCACAAUCAUUGGUCUGUGUAAACCUGCA
.((((((...-....)))))).((((((((((...((((....))))....(((((((((.......)))))))....))..)))))...((((((..(....)..))))))..))))). ( -41.90)
>DroYak_CAF1 6168 120 - 1
GGAACGAAGAAGAGGUCGUUCAGCAGGGGCGACAAUCUCAAAUGGGAAUUAGCGCGGUCUGUAAUAAGGAUCCCCGACGCAAUCGCCGGGCGCACAAUCAUUGGUCUGUGUAAACCUGCA
.((((((........)))))).((((((((((...((((....))))....(((((((((.......)))...))).)))..)))))....(((((..(....)..)))))...))))). ( -41.30)
>DroAna_CAF1 5850 119 - 1
GCAGCAAAGACAGUGGCAA-UAGCAGUGGCGACAAUCUCAAAUGGGAAUUAGCGCGGUCUGUAAUAAGGAUCGGCGACGCAAUCGCCAGGCGCACAAUCAUUGGCCUGUGUAAACCUGCA
((((.....(((..(((..-...((((((......((((....))))....(((((((((.......)))))(((((.....)))))..))))....)))))))))..)))....)))). ( -39.00)
>consensus
GGGACGAAGACGAGGUCGUUCAGCAGGGGCGACAAUCUCAAAUGGGAAUUAGCGCGGUCUGUAAUAAGGAUCGCCGACGCAAUCGCCGGGCGCACAAUCAUUGGCCUGUGUAAACCUGCA
.((((((........)))))).((((((((((...((((....))))....(((((((((.......)))))))....))..)))))((((.((.......)))))).......))))). (-35.63 = -36.38 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:01 2006