Locus 6758

Sequence ID 3R_DroMel_CAF1
Location 17,822,140 – 17,822,243
Length 103
Max. P 0.612788
window10976

overview

Window 6

Location 17,822,140 – 17,822,243
Length 103
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 83.67
Mean single sequence MFE -30.60
Consensus MFE -20.18
Energy contribution -19.78
Covariance contribution -0.40
Combinations/Pair 1.17
Mean z-score -1.82
Structure conservation index 0.66
SVM decision value 0.16
SVM RNA-class probability 0.612788
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17822140 103 + 27905053
ACGCCACAUUGCUGCUGCAAGUGCAAGAGCAACACCAG---------CAG------CGGCCACACCCGCCAACUCCCUUGAACUCUACAAGCUGCUGACCCAGCGGGCAGCCAAAAUG
......(((((((((((....(((....)))....)))---------)))------)(((....(((.........((((.......))))..((((...)))))))..)))..)))) ( -31.20)
>DroSec_CAF1 110501 103 + 1
ACGCCACAUUGCUGCUGCAAGUGCAAGAGCAACACCAG---------CAG------CGGCCACACCCGCCAACUCCCUCGAACUCUACAAGCUGCUGACCCAGCGGGCAGCCAAAAUG
..(((.....(((((((....(((....)))....)))---------)))------)(((.......)))....................((((......)))).))).......... ( -30.30)
>DroSim_CAF1 120941 103 + 1
ACGCCACAUUGCUGCUGCAAGUGCAAGAGCAACACCAG---------CAG------CGGCCACACCCGCCAACUCCCUCGAACUCUACAAGCUGCUGACCCAGCGGGCAGCCAAAAUG
..(((.....(((((((....(((....)))....)))---------)))------)(((.......)))....................((((......)))).))).......... ( -30.30)
>DroEre_CAF1 116288 103 + 1
ACGCCACAUUGCUGCUGCAACUGCAAGAGCGACACCAG---------CAG------CGGCAACACCCGCCAACUCCCUCGAACUCUACAAGCUGCUGACCCAGCGGGCAGCCAAAAUG
..(((...(((((..(((....)))..)))))...(((---------(((------((((.......)))...((....)).........)))))))........))).......... ( -30.30)
>DroAna_CAF1 117414 118 + 1
UCGCCACAUUGCUGCGACAACAACAAACGCCACAACGGGUACAGAUCGAGCGGCAACAGCAUCAGCAGCUAAUUCUUUAGAAUUGUACAAGCUGCUCACCCAGCAGGCUGCCAAAAUG
..(((....(((((((...........)))......((((.......(((((....).)).))((((((((((((....))))).....))))))).))))))))))).......... ( -30.90)
>consensus
ACGCCACAUUGCUGCUGCAAGUGCAAGAGCAACACCAG_________CAG______CGGCCACACCCGCCAACUCCCUCGAACUCUACAAGCUGCUGACCCAGCGGGCAGCCAAAAUG
......((((...(((((.......................................(((.......))).....................((((((...)))))))))))...)))) (-20.18 = -19.78 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:14 2006