Locus 6757

Sequence ID 3R_DroMel_CAF1
Location 17,819,133 – 17,819,228
Length 95
Max. P 0.840791
window10975

overview

Window 5

Location 17,819,133 – 17,819,228
Length 95
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 93.22
Mean single sequence MFE -22.42
Consensus MFE -20.03
Energy contribution -20.20
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.48
Structure conservation index 0.89
SVM decision value 0.75
SVM RNA-class probability 0.840791
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17819133 95 + 27905053
AAACAGCAUUGAAAUCCCGCCUUGCGGCCGUCGACGUC---GUCAUCUUCAUACGCAAUGUGUGUCGCACCGACCACAUGCACAAAACAAACGC----------ACAC
.....((..((((...((((...))))..(.((....)---).)...))))...(((.((((.((((...)))))))))))...........))----------.... ( -21.90)
>DroSec_CAF1 107595 95 + 1
AAACAGCAUUGAAAUCCCGCCUUGCGGCCGUCGACGUC---GUCAUCUUCAUACGCAAUGUGUGUCGCCCCGACCACAUGCACAAAACAAACGC----------ACAC
.....((..((((...((((...))))..(.((....)---).)...))))...(((.((((.((((...)))))))))))...........))----------.... ( -21.90)
>DroSim_CAF1 118063 95 + 1
AAACAGCAUUGAAAUCCCGCCUUGCGGCCGUCGACGUC---GUCAUCUUCAUACGCAAUGUGUGUCGCCCCGACCACAUGCACAAAACAAACGC----------ACAC
.....((..((((...((((...))))..(.((....)---).)...))))...(((.((((.((((...)))))))))))...........))----------.... ( -21.90)
>DroEre_CAF1 113259 95 + 1
AAACAGCAUUGAAAUCCCGCCUUGCGGCCGUCGACGUC---GUCAUCUUCAUACGCAAUGUGUGUCGCCCCGACCACAUGCACAAAACACACGC----------ACAC
.....((..((((...((((...))))..(.((....)---).)...))))...(((.((((.((((...)))))))))))...........))----------.... ( -21.90)
>DroYak_CAF1 114523 98 + 1
AAACAGCAUUGAAAUCCCGCCUUGCGGCCGUCGACGUCGUCGUCAUCUUCAUACGCAAUGUGUGUCGCACCGACCACAUGCACAAAACAAACGC----------ACAC
.....((..((((...((((...)))).....((((....))))...))))...(((.((((.((((...)))))))))))...........))----------.... ( -25.20)
>DroAna_CAF1 114661 104 + 1
AACUCGCAUUGAAAUCCCGCCUUGCGGCCGUCGACGUC---GUCAUCUUCAUACGCAAUGUGUGUCGC-CCGACCACAUGCACAAAACAAACCCAUACACACGCACAC
.....((..((((...((((...))))..(.((....)---).)...))))...(((.((((.(((..-..)))))))))).....................)).... ( -21.70)
>consensus
AAACAGCAUUGAAAUCCCGCCUUGCGGCCGUCGACGUC___GUCAUCUUCAUACGCAAUGUGUGUCGCCCCGACCACAUGCACAAAACAAACGC__________ACAC
.....((..((((...((((...)))).....(((......)))...))))...(((.((((.((((...)))))))))))...........)).............. (-20.03 = -20.20 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:13 2006