Locus 6756

Sequence ID 3R_DroMel_CAF1
Location 17,815,628 – 17,815,722
Length 94
Max. P 0.563201
window10974

overview

Window 4

Location 17,815,628 – 17,815,722
Length 94
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 86.37
Mean single sequence MFE -21.60
Consensus MFE -18.82
Energy contribution -18.98
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.45
Structure conservation index 0.87
SVM decision value 0.06
SVM RNA-class probability 0.563201
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17815628 94 - 27905053
CGUAUGCACUUUUCGGCCUGCAUGCAAUUUGAUUGGCCGCAACAUUUUUCGGCCAACA---------A---AAAAAACG-GGACGAGA---AAAAAGAAUGAAGCCUAAA
.........((((((.((((.......((((.(((((((.((....)).)))))))))---------)---).....))-)).)))))---).................. ( -22.10)
>DroSec_CAF1 104086 103 - 1
CGUAUGCACUUUUCGGCCUGCAUGCAAUUUGAUUGGCCGCAACAUUUUUCGGCCAACAGGCAAACACA---AAAAAACG-GGACGAGA---AAAAAGAAUGAAACCUAAA
.........((((((.((((..(((....((.(((((((.((....)).))))))))).)))......---......))-)).)))))---).................. ( -20.74)
>DroSim_CAF1 113748 103 - 1
CGUAUGCACUUUUCGGCCUGCAUGCAAUUUGAUUGGCCGCAACAUUUUUCGGCCAACAGGCAAACACA---AAAAAACG-GGACGAGA---AAAAAGAAUGAAACCUAAA
.........((((((.((((..(((....((.(((((((.((....)).))))))))).)))......---......))-)).)))))---).................. ( -20.74)
>DroEre_CAF1 109848 105 - 1
CGUAUGCACUUUUCGGCCUGCAUGCAAUUUGAUUGGCCGCAACAUUUUUCGGCCAACAGCAAAACACA-AAAAAAAGCG-GUACGAGC---AGCAAGAAUAAAACCUAAA
.(((((((..........)))))))..((((.(((((((.((....)).)))))))...)))).....-.......((.-((....))---.))................ ( -22.20)
>DroYak_CAF1 111022 106 - 1
CGUAUGCACUUUUCGGCCUGCAUGCAAUUUGAUUGGCCGCAACAUUUUUCGGCCAACAGGCAAACACACAAAAAAAGCG-GUACGUGA---AAAAAGAAUAAAACCUAAA
(((((((.(.....)(((((((.......)).(((((((.((....)).))))))))))))...............)).-)))))...---................... ( -21.40)
>DroAna_CAF1 111509 104 - 1
CGUAUGCACUUUUCGGCCUGCAUGCAAUUUGAUUGGCCGCAACAUUUUUCGGCCAACAGA---ACUGA---AAACAGCCAGAACAAAACCCAAAAAAAAAAAACCACACA
.(((((((..........)))))))..((((.(((((((.((....)).)))))))))))---.(((.---.......)))............................. ( -22.40)
>consensus
CGUAUGCACUUUUCGGCCUGCAUGCAAUUUGAUUGGCCGCAACAUUUUUCGGCCAACAGGCAAACACA___AAAAAACG_GGACGAGA___AAAAAGAAUAAAACCUAAA
.(((((((..........)))))))...(((.(((((((.((....)).))))))))))................................................... (-18.82 = -18.98 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:12 2006