Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 17,814,330 – 17,814,436 |
Length | 106 |
Max. P | 0.882992 |
Location | 17,814,330 – 17,814,436 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 81.23 |
Mean single sequence MFE | -22.03 |
Consensus MFE | -15.50 |
Energy contribution | -14.50 |
Covariance contribution | -1.00 |
Combinations/Pair | 1.39 |
Mean z-score | -2.03 |
Structure conservation index | 0.70 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882992 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17814330 106 - 27905053 CAUACA-AAUAUUAAAA-AAAGGAGGGGA---ACCUAAAUAAAAA-AGGCAGCAAGUAAUAUGAGAGUGGCAAGGGCGCGG--AUAGAGGACAUUAAAGUUCCAGCUGCCGGUG ..(((.-..........-.....(((...---.))).........-.((((((.............(((.(...).)))..--...(.((((......))))).)))))).))) ( -22.60) >DroSec_CAF1 102854 106 - 1 CAUACA-AAUAUUAAAA-AAAGGAGGGGA---ACCUAAAUAAAAA-AGGCAGCAAGUAAUACGAGAGUGGCAAGGGCGCGG--AUAGAGGACAUUAAAGUUCCAGCUGCCGGUG ..(((.-..........-.....(((...---.))).........-.((((((..((..(((....)))((....))))..--...(.((((......))))).)))))).))) ( -24.00) >DroSim_CAF1 112528 106 - 1 CAUACA-AAUAUUAAAA-AAAGAAGGGGA---ACCUAAAUAAAAA-AGGCAGCAAGUAAUAUGAGAGUGGCAAGGGCGCGG--AUAGAGGACAUUAAAGUUCCAGCUGCCGGUG ..(((.-..........-.....(((...---.))).........-.((((((.............(((.(...).)))..--...(.((((......))))).)))))).))) ( -22.50) >DroEre_CAF1 108685 106 - 1 UAUACA-AAUAUUAAAAAAAAGGAGGGGA---ACCGAAAUAAAAA-AGGCAGCAAGUAAUAUGAGAAUGGCUGGGGCGCGG--AUGGAGGACAUUGAAGUUCCAGCUGCAG-CA ......-.................((...---.))..........-..((.(((.....(((....)))((((((((...(--(((.....))))...))))))))))).)-). ( -23.60) >DroWil_CAF1 132065 106 - 1 CAAACAAAAUA--AAAA-AAGGGAGAAGAAAUAUCUAAAUAAACGUCAGCGGCAAGCAAUAUUGCAAUG-----GGCGGGGGAAGGGGGGAUAUUAAAAUUGCAGCUGCUGUAA ...........--....-...........(((((((.......((((....((((......))))....-----))))..........)))))))....((((((...)))))) ( -17.43) >consensus CAUACA_AAUAUUAAAA_AAAGGAGGGGA___ACCUAAAUAAAAA_AGGCAGCAAGUAAUAUGAGAGUGGCAAGGGCGCGG__AUAGAGGACAUUAAAGUUCCAGCUGCCGGUG .......................(((.......)))...........((((((..((..(((....)))......))...........((((......))))..)))))).... (-15.50 = -14.50 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:11 2006