Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 17,792,588 – 17,792,680 |
Length | 92 |
Max. P | 0.652693 |
Location | 17,792,588 – 17,792,680 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 81.33 |
Mean single sequence MFE | -17.27 |
Consensus MFE | -9.90 |
Energy contribution | -11.03 |
Covariance contribution | 1.13 |
Combinations/Pair | 1.11 |
Mean z-score | -2.10 |
Structure conservation index | 0.57 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.652693 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17792588 92 - 27905053 UAUGUUUCCCAACUCACCUGCUCAUUGCUCGACAUCUCGAACAUGCAAUUAGCACCAAAAAA-AGGUAAUAACUUGGCUGCUUCAUUCAGUCA ..((((.((.........((((.(((((((((....))))....))))).))))........-.)).))))...((((((.......)))))) ( -17.97) >DroEre_CAF1 86790 93 - 1 UAAGUUUCCCAACUCACCUGCUCACUGCUCGACAUCUCGAACAUGCAAUUAGCACCAAAAAAAAGGUAAUAACUUGGCUGCUUCAUUCAGUCA .(((((.............(((.(.(((((((....))))....))).).)))(((........)))...)))))(((((.......))))). ( -15.10) >DroYak_CAF1 87376 93 - 1 UAAGUUUACCAACUCACCUGCUCAUUGCUCGACAUCUCGAACAUGCAAUUAGCACCAAAAAAAGGGUAAUAACUUGGCUGCUUCAUUCAGUCA .(((((((((........((((.(((((((((....))))....))))).))))..........))))..)))))(((((.......))))). ( -21.37) >DroAna_CAF1 88808 70 - 1 ----------AACUCACCUG---GCUGUUCGACAUCUCGAACAUGCAAUUAGCACCGAAAAA----------UGUUGCUGCCUCAUUCAAUCA ----------.........(---(((((((((....))))))).(((((.............----------.))))).)))........... ( -14.64) >consensus UAAGUUUCCCAACUCACCUGCUCACUGCUCGACAUCUCGAACAUGCAAUUAGCACCAAAAAA_AGGUAAUAACUUGGCUGCUUCAUUCAGUCA ..................((((.(((((((((....))))....))))).))))....................((((((.......)))))) ( -9.90 = -11.03 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:07 2006