Locus 6751

Sequence ID 3R_DroMel_CAF1
Location 17,792,220 – 17,792,321
Length 101
Max. P 0.565530
window10967

overview

Window 7

Location 17,792,220 – 17,792,321
Length 101
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 79.38
Mean single sequence MFE -28.64
Consensus MFE -17.30
Energy contribution -18.06
Covariance contribution 0.76
Combinations/Pair 1.09
Mean z-score -1.71
Structure conservation index 0.60
SVM decision value 0.06
SVM RNA-class probability 0.565530
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17792220 101 - 27905053
GGUGGUAAGUCGAGUCAA----UCAAGAAAAUCGCGAAAUGGCGGCCAGCAACAGUUGGCGCCAAUUGUUGCUUCAAUCAG---UCGAAAUCAAGUUGAAACGCUGCC
.(((((...((.......----....))..))))).....((((((..((((((((((....))))))))))((((((..(---.......)..))))))..)))))) ( -30.50)
>DroSec_CAF1 80782 101 - 1
GGUGGUAAGUCGAGUCAA----UCAAGAAAAUCGCGAAAAGGCGGCCAGCAACAGUUGGCGCCAAUUGUUGCUUCAAUCAG---UCGAAAUCAAGUUGAAACGCUGCC
.(((((...((.......----....))..))))).....((((((..((((((((((....))))))))))((((((..(---.......)..))))))..)))))) ( -30.70)
>DroEre_CAF1 86416 101 - 1
GGUGGUAAGUGUAGUCAA----UCAAGAAAAUCGCGAAAAGGCGGCCAGCAACAGUUGGCGCCAAUUGUUGCUUCAAUCAG---UUGAAACCAAGUUCAAACUCUGCC
(((.((..(((...((..----....))....)))......)).)))(((((((((((....))))))))))).....(((---(((((......)))))...))).. ( -26.20)
>DroWil_CAF1 102951 92 - 1
---CGUUAGCGACGUCAAAACGUUAA-CAAAUGUCAAAAGGG-----AGCAACAGUUGGCGCCAAUUGUUGCUUCAAUCAACACUCGAGU-----CCG--CGAAUGCC
---.(((((((.........))))))-)............((-----(((((((((((....)))))))))))))......((.(((...-----...--))).)).. ( -28.20)
>DroYak_CAF1 86998 101 - 1
GGUGGUAAGUUGAGUCAA----UCAAGAAAAUCGCGAGAAGGCAACCAGCAACAGUUGGCGCCAAUUGUUGCUUCAAUCAG---UGGAAAUCAAGUUGAAACUCUGCC
.(((((...((((.....----))))....))))).....((((....((((((((((....))))))))))((((((..(---(....))...))))))....)))) ( -27.60)
>consensus
GGUGGUAAGUCGAGUCAA____UCAAGAAAAUCGCGAAAAGGCGGCCAGCAACAGUUGGCGCCAAUUGUUGCUUCAAUCAG___UCGAAAUCAAGUUGAAACGCUGCC
.(((((........................))))).....(((((..(((((((((((....)))))))))))....((.......))...............))))) (-17.30 = -18.06 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:06 2006