Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,445,052 – 2,445,155 |
Length | 103 |
Max. P | 0.608348 |
Location | 2,445,052 – 2,445,155 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 85.67 |
Mean single sequence MFE | -29.43 |
Consensus MFE | -21.19 |
Energy contribution | -21.87 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.12 |
Mean z-score | -2.02 |
Structure conservation index | 0.72 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.608348 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2445052 103 + 27905053 UGGAGACACCCAAGAAGGUUGAGGGGAAGUGAUCCAACAGUGGGAUACCCUGUACUUUAUAGUGGGUCUUGGUCAAUAGAGGAAUCAGAAGGCAAUAACAU----------A-A .(....)(((((..(((((..((((......((((.......)))).))))..)))))....)))))....(((....((....))....)))........----------.-. ( -22.70) >DroSec_CAF1 4053 114 + 1 UGGAGACACCUAAGAAGGUUGGGAGAAAGUGAUCCAACAGUGGGAUACCCAGUAUUCUAUUGUUGGUCUUGGUCAAUAGAGGAAUCAGAAGGCAAUUUCAGACCAAAAGCUAAU ((....))(((((.....)))))....(((((.(((((((((((((((...)))))))))))))))))((((((....((....)).((((....)))).))))))..)))... ( -35.30) >DroSim_CAF1 835 114 + 1 UGGAGACACCUAAGAAGGUUGGGAGAAAGUGAUCCAACAGUGGGAUACCCAGUAUUCUAUUGUUGGUCUUGGUCAAUAGAGGAAUCAGAAGGCAAUUUCAGACAAAAAGCUAAU ((....))(((((.....)))))....(((((.(((((((((((((((...)))))))))))))))))...(((....((....)).((((....)))).))).....)))... ( -30.30) >consensus UGGAGACACCUAAGAAGGUUGGGAGAAAGUGAUCCAACAGUGGGAUACCCAGUAUUCUAUUGUUGGUCUUGGUCAAUAGAGGAAUCAGAAGGCAAUUUCAGAC_AAAAGCUAAU ((....))(((.....((..((((.........(((((((((((((((...)))))))))))))))))))..)).....)))................................ (-21.19 = -21.87 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:00 2006