Locus 6747

Sequence ID 3R_DroMel_CAF1
Location 17,770,884 – 17,770,977
Length 93
Max. P 0.889346
window10958

overview

Window 8

Location 17,770,884 – 17,770,977
Length 93
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 82.09
Mean single sequence MFE -35.17
Consensus MFE -26.77
Energy contribution -28.28
Covariance contribution 1.50
Combinations/Pair 1.00
Mean z-score -1.98
Structure conservation index 0.76
SVM decision value 0.96
SVM RNA-class probability 0.889346
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17770884 93 - 27905053
GCGUUUGGCAAUUGGCAACU-------GGCGACUGGCCACUGGCAACUUUCAACUGACGGAACUGGAGGAACUGGCGGAACUGAGCCAAGUGCCAAGCGC--------
((((((((((.(((((...(-------(((.....))))(((.((.((((((...........))))))...)).)))......))))).))))))))))-------- ( -38.30)
>DroSec_CAF1 59312 100 - 1
GCGUUUGGCAAUUGGCAACUGGUAGCUGGCAACUGGCCACUGGCAACUUUCAACUGGCGGAACUGGAGGAACUGGCGGAACUGAACCAAGUGCCAAGCGC--------
((((((((((.((((....((.(((.((((.....))))))).))...((((.(((.(((..(....)...))).)))...)))))))).))))))))))-------- ( -37.40)
>DroSim_CAF1 60208 93 - 1
GCGUUUGGAAAUUGGCAACU-------GGCAACUGGCCACUGGCAACUUUCAACUGGCGGAACUGGAGGAACUGGCGGAACUGAGCCAAGUGCCAAGCGC--------
((((((((...(((((...(-------(((.....))))(((.((...(((..(..(.....)..)..))).)).)))......)))))...))))))))-------- ( -34.60)
>DroYak_CAF1 63698 85 - 1
GCGUUUGGCAAUUGGCAACU-------GGCA-------ACUGGCAACUUUCAACUGGCGGA---------ACUGGCGGAACUGAGCCAAGUGCCAAGCUCCAAGCUCC
..((((((...((((((..(-------(((.-------...(....)......(((.((..---------..)).)))......))))..))))))...))))))... ( -30.40)
>consensus
GCGUUUGGCAAUUGGCAACU_______GGCAACUGGCCACUGGCAACUUUCAACUGGCGGAACUGGAGGAACUGGCGGAACUGAGCCAAGUGCCAAGCGC________
((((((((((.(((((...........(((.....)))...(....)......(((.(((...........))).)))......))))).))))))))))........ (-26.77 = -28.28 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:58 2006