| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,768,434 – 17,768,592 |
| Length | 158 |
| Max. P | 0.999313 |
| Location | 17,768,434 – 17,768,524 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 88.07 |
| Mean single sequence MFE | -13.08 |
| Consensus MFE | -12.80 |
| Energy contribution | -12.60 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.98 |
| SVM decision value | 3.50 |
| SVM RNA-class probability | 0.999313 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17768434 90 + 27905053 AGCCAAAUUGCCGCAUUUCCAUUCGCAUCACACAUGCAAUUUAAGAGUACAUACAAGUUCAGCGGCCACUCUCACACACAAACACACUCA .........(((((..........((((.....)))).........(.((......)).).)))))........................ ( -12.80) >DroSec_CAF1 56907 86 + 1 AGCCAAAUUGCCGCAUUUCCAUUCGCAUCACACAUGCAAUUUAAGAGUACAUACAAGUUCAGCGGCCACUCACACACAC----ACACAUA .........(((((..........((((.....)))).........(.((......)).).))))).............----....... ( -12.80) >DroSim_CAF1 57770 86 + 1 AGCCAAAUUGCCGCAUUUCCAUUCGCAUCACACAUGCAAUUUAAGAGUACAUACAAGUUCAGCGGCCACUCACACACAC----ACACAUA .........(((((..........((((.....)))).........(.((......)).).))))).............----....... ( -12.80) >DroEre_CAF1 62559 82 + 1 AACUAAAUUGCCGCAUUUCAAUUCGCAUCACACAUGCAAUUUAAGAGCACAUAUAAGUUCAGCAGCCACACACACACAC----ACA---- .........((.((..........((((.....)))).......((((........)))).)).)).............----...---- ( -10.90) >DroYak_CAF1 61139 80 + 1 CACUAAAUUGCCGCAUUUCAAUGCGCAUCACACAUGCAAUUUAAGAGCACAUACAAGUUCAGUGGCCACUCACACACAC----A------ ...(((((((((((((....)))))..........)))))))).((((........)))).(((........)))....----.------ ( -16.10) >consensus AGCCAAAUUGCCGCAUUUCCAUUCGCAUCACACAUGCAAUUUAAGAGUACAUACAAGUUCAGCGGCCACUCACACACAC____ACAC__A .........(((((..........((((.....)))).......((((........)))).)))))........................ (-12.80 = -12.60 + -0.20)
| Location | 17,768,486 – 17,768,592 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 77.78 |
| Mean single sequence MFE | -26.86 |
| Consensus MFE | -17.42 |
| Energy contribution | -17.45 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.655210 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17768486 106 - 27905053 GGCAUAUAUGCAAACAAUUCAAUUACAAAUUACGCAUACGCCAUGUGCGCCACGUGGUUCGUUGUAUCUGAGUGUGUUUGUGUGUGAGAGUGGCCGCUGAACUUGU-- (((.(((((((((((((((((..((((....(((.....((((((((...)))))))).)))))))..))))).))))))))))))......)))...........-- ( -31.60) >DroVir_CAF1 58280 89 - 1 ACCAUUUACG------UUUCAAUUA-AUAUUACGUAUACGUUAUAUUUUGGCUGUGUUUGU--------GUGCGU----GUGUGUGUGUAUGGUCGGUGAACUUGUGG .((((((((.------..(((....-((((((((((((((..((((.......)))).)))--------))))))----).)))).....)))...))))....)))) ( -17.20) >DroSec_CAF1 56959 102 - 1 GGCAUAUAUGCAAACAAUUCAAUUACAAAUUACGCAUACGCCAUGUGCGCCACGUGGUUCAUUGUAUCUAUGUGU----GUGUGUGUGAGUGGCCGCUGAACUUGU-- (((...(((((......................)))))(((((((..((((((((((..........))))))).----)))..)))).))))))...........-- ( -28.35) >DroSim_CAF1 57822 102 - 1 GGCAUAUAUGCAAACAAUUCAAUUACAAAUUACGCAUACGCCAUGUGCGCCACGUGGUUCAUUCUAUCUAUGUGU----GUGUGUGUGAGUGGCCGCUGAACUUGU-- (((...(((((......................)))))(((((((..((((((((((..........))))))).----)))..)))).))))))...........-- ( -28.35) >DroEre_CAF1 62611 94 - 1 GGCAUAUAUGCAAACAAUUCAAUUACAAAUUACGCAUACGCCAUGUGCGCCACGUGGUUCGUUG--------UGU----GUGUGUGUGUGUGGCUGCUGAACUUAU-- (.(((((((((....((((........))))((((((((((((((((...)))))))).....)--------)))----))))))))))))).)............-- ( -26.90) >DroYak_CAF1 61191 87 - 1 GGCAUAUAUGCAAACAAUUCAAUUACAAAUUACGCAUACGCCAUGUGCGCCACGUGGCU---------------U----GUGUGUGUGAGUGGCCACUGAACUUGU-- .(((....)))..((((((((........((((((((((((((((((...)))))))).---------------.----))))))))))........)))).))))-- ( -28.79) >consensus GGCAUAUAUGCAAACAAUUCAAUUACAAAUUACGCAUACGCCAUGUGCGCCACGUGGUUCAUUG______UGUGU____GUGUGUGUGAGUGGCCGCUGAACUUGU__ .((......))......((((........((((((((((((((((((...)))))))).....................))))))))))........))))....... (-17.42 = -17.45 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:55 2006