Locus 6744

Sequence ID 3R_DroMel_CAF1
Location 17,765,515 – 17,765,613
Length 98
Max. P 0.693795
window10953

overview

Window 3

Location 17,765,515 – 17,765,613
Length 98
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 85.74
Mean single sequence MFE -21.21
Consensus MFE -17.32
Energy contribution -18.24
Covariance contribution 0.92
Combinations/Pair 1.08
Mean z-score -1.63
Structure conservation index 0.82
SVM decision value 0.34
SVM RNA-class probability 0.693795
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17765515 98 - 27905053
---GCCAGUAUUGUGGAUUAGUUGGCUGAAAUCGAAGGGAAGACGAAAAUAAAUAUGAUUUACAGUGGGUGCAAGUUAAUUGAUUCAUAUACA-----AGUUAUUA
---....((((.(((((((((((((((...(((.(..(........................)..).)))...))))))))))))))))))).-----........ ( -20.26)
>DroSec_CAF1 54021 103 - 1
---GCCAGUAUUGUGGAUUAGUUGGCUGAAAUCGAAGGGAAGACGAAAAUAAAUAUGAUUUACAGUGGGUGCAAGUUAAUUGAUUCAUAUACAUAACAAGUUAUUA
---....((((.(((((((((((((((...(((.(..(........................)..).)))...))))))))))))))))))).............. ( -20.26)
>DroSim_CAF1 54890 100 - 1
---GCCAGUAUUGUGGAUUAGUUGGCUGAAAUCGAAGGGAAGACGAAAAUAAAUAUGAUUUACAGUGGGUGCAAGUUAAUUGAUUCAUAUACAUA---AGUUAUUA
---....((((.(((((((((((((((...(((.(..(........................)..).)))...)))))))))))))))))))...---........ ( -20.26)
>DroEre_CAF1 56704 83 - 1
---GCCAGUACUGUGGAUUAGUUGGCUGGAAUCGAAGGGUAGGCGAAAAUAAAUAUGAUUUACAGUGGGUGCUAGUUAAUUGAUUC--------------------
---(((..((((((((((((.((.(((...(((....))).))).))........)))))))))))))))................-------------------- ( -19.70)
>DroYak_CAF1 58094 106 - 1
AUUGUCAGUAUUGUGGAUUAGUUGGCUGAAAUCGAAGGGAGGACAAAAAUAAAUAUGAUUUACAGUGGGUGCAAGCUAAUUGAUUCAUAUGCAUGUCAAGUUAUUU
.(((.((((((.(((((((((((((((...(((.(..(........................)..).)))...))))))))))))))))))).)).)))....... ( -25.56)
>consensus
___GCCAGUAUUGUGGAUUAGUUGGCUGAAAUCGAAGGGAAGACGAAAAUAAAUAUGAUUUACAGUGGGUGCAAGUUAAUUGAUUCAUAUACAU____AGUUAUUA
.......((((.(((((((((((((((...(((.(..(........................)..).)))...))))))))))))))))))).............. (-17.32 = -18.24 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:53 2006