| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,765,128 – 17,765,231 |
| Length | 103 |
| Max. P | 0.642248 |
| Location | 17,765,128 – 17,765,231 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 81.94 |
| Mean single sequence MFE | -33.50 |
| Consensus MFE | -21.42 |
| Energy contribution | -22.28 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.642248 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17765128 103 + 27905053 CAGUUGAUAAAUCUUUUUCGGCGCGGCAUUGCCG-UGUCAUAAAUUUGCAUUGGGCCAUGCC------AUUGGCCCUGACAUUUCUAAGGCUUCCUUGGAGCUGCAGCAG------ ...................((((((((...))))-)))).......(((...((((((....------..))))))((.((.((((((((...)))))))).))))))).------ ( -38.10) >DroVir_CAF1 55104 95 + 1 CAGUUGAUAAAUCU----CGGCGCGCCGU------UGUCAUAAAUUUGCAUUGGGCCAUGCC------AUUGGCCCUGACAUUUCUAAGGCUUCCUUGCCAG--CCA---GUUGGU ....((((((....----(((....))))------)))))..((((.((...((((((....------..))))))............(((......))).)--).)---)))... ( -27.00) >DroPse_CAF1 57138 113 + 1 CAGUUGAUAAAUCUUU---GGCGCAGCAUUGCCGUUGUCAUAAAUUUGCAUUGGGCCAUGCCAUUGCCAUUGGCCCUGACAUUUCUAAGGCUUCCUUGGAGUCGCUGAAAGUCGGU ...........((..(---((((..((((.(((..((.((......))))...))).))))...)))))..))..(((((.((((...(((((.....)))))...))))))))). ( -33.10) >DroYak_CAF1 57680 99 + 1 CAGUUGAUAAAUCUUUUUCGGCGCGGCAUUGCCG-UGUCAUAAAUUUGCAUUGGGCCAUGCC------AUUGGCCCUGACAUUUCUAAGGCUUCCUUGGAGCUGCA---------- ...................((((((((...))))-)))).......((((..((((((....------..))))))......((((((((...)))))))).))))---------- ( -35.40) >DroAna_CAF1 62068 98 + 1 CAGUUGAUAAAUCUUU---GGCGCGGCAUUGCCGUUGUCAUAAAUUUGCAUUGGGCCAUGCC------AUUGGCCCUGACAUUUCUAAGGCUUCCUUGGAGCUC-GGC-------- ..(((((.((((...(---((((((((...)))).)))))...))))((...((((((....------..)))))).......(((((((...)))))))))))-)))-------- ( -33.60) >DroPer_CAF1 57113 113 + 1 CAGUUGAUAAAUCUUU---GGCGCAGCAUUGCCGUUGUCAUAAAUUUGCAUUGGGCCAUGCCAUUGCCAUUGGCCCUGACAUUUCUAAGGCUUCCUUGGAGUCGCUGACGGUCGAU ..((((((........---((((......))))..(((((.......((...((((((.((....))...)))))).(((...(((((((...))))))))))))))))))))))) ( -33.81) >consensus CAGUUGAUAAAUCUUU___GGCGCGGCAUUGCCG_UGUCAUAAAUUUGCAUUGGGCCAUGCC______AUUGGCCCUGACAUUUCUAAGGCUUCCUUGGAGCUGCAG_________ ...................((((......))))..(((((............((((((............))))))))))).((((((((...))))))))............... (-21.42 = -22.28 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:52 2006