Locus 6741

Sequence ID 3R_DroMel_CAF1
Location 17,763,550 – 17,763,656
Length 106
Max. P 0.557584
window10949

overview

Window 9

Location 17,763,550 – 17,763,656
Length 106
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 83.22
Mean single sequence MFE -23.00
Consensus MFE -15.30
Energy contribution -16.13
Covariance contribution 0.83
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.67
SVM decision value 0.05
SVM RNA-class probability 0.557584
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17763550 106 + 27905053
------C--AGC-AAAAAUAAAGGGCAAAAUACGAAAAACCUUGAGGACGGUCAGUAACCGACAAACCGCCAGCCCAGUA--AAAUUUGUAUGAGCUGCCAACGAAAUAUUUCCUUC
------(--(((-.........((((......(((......))).((.((((..((.....))..)))))).)))).(((--.......)))..))))................... ( -19.80)
>DroVir_CAF1 53469 105 + 1
CUGCUUC--UGC-AA----AAAGGGCAAAAUACGAAAAACCUUGAGGACGGUCAGUAACCGACA-ACCGCCAGCCCAGAA--AAAUUUGUAUGAGCAGCAAACGAAAAUUUUUUU--
((((((.--(((-((----(..((((......(((......))).((.((((..((.....)).-)))))).))))....--...)))))).)))))).................-- ( -25.20)
>DroGri_CAF1 48829 103 + 1
CUGCUUC--UGC-AA----AAAGGGCAAAAUACGAAAAACCUUGAGGACGGUCAGUAACCGACA-ACCGCCAGCCCAGAA--AAAUUUGUAUGAGCAGCAAACGAAAAUU--UUU--
((((((.--(((-((----(..((((......(((......))).((.((((..((.....)).-)))))).))))....--...)))))).))))))............--...-- ( -25.20)
>DroWil_CAF1 66828 106 + 1
------AAAAACAAAAUAUAAAGGGCAAAAUACGAAAAACCUUGAGGACGGUCAGUAACCGACA-ACCGCCAGCCCAGUA--AAAUUUGUAUGAGUUGCAAACGAAUUUU--GUUUC
------..(((((((((.....((((......(((......))).((.((((..((.....)).-)))))).))))....--...((((((.....))))))...)))))--)))). ( -24.50)
>DroMoj_CAF1 61827 107 + 1
CUGCUUC--UGC-AA----AAAGGGCAAAAUACGAAAAACCUUGAGGACGGUCAGUAACCGACA-ACCGCCAGCCCAGAAAAAAAUUUGUAUGAGCAGCAAACGAAAUUUUUUUU--
((((((.--(((-((----(..((((......(((......))).((.((((..((.....)).-)))))).)))).........)))))).)))))).................-- ( -24.50)
>DroAna_CAF1 60714 98 + 1
------C--AGC-AAAAAUAAAGGGCAAAAUACGAAAAACCUUGAGGACGGUCAGUAAC--------CGCCAGCCCAGUA--AAAUUUGUAUGAGCUGCAAACGAAAUAUAUCUUUC
------(--(((-.........((((......(((......))).((.((((.....))--------)))).)))).(((--.......)))..))))................... ( -18.80)
>consensus
______C__AGC_AA____AAAGGGCAAAAUACGAAAAACCUUGAGGACGGUCAGUAACCGACA_ACCGCCAGCCCAGAA__AAAUUUGUAUGAGCAGCAAACGAAAUUUUUUUU__
......................((((......(((......))).((.((((..((.....))..)))))).)))).........(((((.((.....)).)))))........... (-15.30 = -16.13 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:49 2006