Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,444,038 – 2,444,153 |
Length | 115 |
Max. P | 0.692966 |
Location | 2,444,038 – 2,444,153 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.98 |
Mean single sequence MFE | -43.72 |
Consensus MFE | -27.18 |
Energy contribution | -28.70 |
Covariance contribution | 1.52 |
Combinations/Pair | 1.08 |
Mean z-score | -3.05 |
Structure conservation index | 0.62 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.692966 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2444038 115 - 27905053 AUAAACCACUUAGGCUGGGGCCCCGAA---AUUGGGCGUGGCCAGCCACUUUU-CGAGCAUUCUCUUACCUCGAAGCA-GCAGCACUUUUGGCUGCCGCUGCACUCGCAGCGCAUAAAUC ............((((((.((((((..---..)))).))..))))))....((-((((...........))))))((.-(((((.(....)))))).(((((....)))))))....... ( -42.10) >DroSec_CAF1 3045 115 - 1 AUAAACCACUUAGGCUGGGGCCCCGAA---AGUGGGCUUGGCCAGCCACUUUU-CGAGCAUUCUCUUACCUCGAAGCA-GCAGCACUGUUGGCUGCCGCUGCACUCGCAGCGCAUAAAUC ............((((((((((((...---.).)))))...))))))....((-((((...........))))))((.-(((((.(....)))))).(((((....)))))))....... ( -47.90) >DroEre_CAF1 4413 116 - 1 AUAAACCACUUAGGCUGGGGCCCCGAA---AGUGGGCGUGGCCAGCCACUUUU-CGAGCAUUCUCUUACCUCGAAGCAGGCAGCACUUUUGACUGCCGCUGCACUCGCAGCGCAUAAAUC ............((((((.(((((...---.).))))....))))))....((-((((...........))))))((.(((((((....)).)))))(((((....)))))))....... ( -47.40) >DroYak_CAF1 4609 116 - 1 AUAAACCACUUAGGCUGGGGCCCCGAA---AGUGGGCGUGGCCAGCCACUUUU-CGAGCAUUCUCUUACCUCGAAGCAGGCAGCACUUUUGGCUGCCGCUGCACUACCAGCGCAUAAAUC ............((((((.(((((...---.).))))....))))))....((-((((...........))))))((.((((((.(....)))))))((((......))))))....... ( -46.40) >DroAna_CAF1 4379 112 - 1 AUAAACCACUUAGGCUGCGACCGCAAAAAAAGGAGGCGUGGCCAGCCACUUUAGAGAGC-------UACCUUGAAGGC-AGAGCACUUUUGCCACACGCUGCACUCGCAGCGCAUAAAUC .............(((((((..(((....((((.(((((((....))))((....))))-------).))))...(((-((((...)))))))......)))..)))))))......... ( -34.80) >consensus AUAAACCACUUAGGCUGGGGCCCCGAA___AGUGGGCGUGGCCAGCCACUUUU_CGAGCAUUCUCUUACCUCGAAGCA_GCAGCACUUUUGGCUGCCGCUGCACUCGCAGCGCAUAAAUC ............((((((.((((..........))))....)))))).......((((...........))))..((..(((((.......))))).(((((....)))))))....... (-27.18 = -28.70 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:59 2006