Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 17,758,656 – 17,758,747 |
Length | 91 |
Max. P | 0.564695 |
Location | 17,758,656 – 17,758,747 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 87.61 |
Mean single sequence MFE | -28.22 |
Consensus MFE | -21.01 |
Energy contribution | -21.21 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.10 |
Mean z-score | -1.59 |
Structure conservation index | 0.74 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564695 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17758656 91 + 27905053 UCCACUUGUUGCACACACCGAAACACCGAAAGUGCACUAAUUUCGGGUUCGUGUGCUCGUUGUUGGCU-----------------GUUUAGGUUGCCAGCG-AAAAAUU ..........((((((...(((...((((((.........)))))).)))))))))...((((((((.-----------------.........)))))))-)...... ( -27.30) >DroSec_CAF1 47288 91 + 1 UCCACUUGUUGCACACACCGAAACACCGAAAGAGCACUAAUUUCGGGUUCGUGUGCUCGUUGUUGGCU-----------------GUUUAGGUUGCCAGCG-UAAAAUU ........((((.(((((.(((...((((((.........)))))).))))))))......((((((.-----------------.........)))))))-))).... ( -26.20) >DroSim_CAF1 47728 91 + 1 UCCACUUGUUGCACACACCGAAACACCGAAAGAGCACUAAUUUCGGGUUCGUGUGCUCGUUGUUGGCU-----------------GUUUAGGUUGCCAGCG-UAAAAUU ........((((.(((((.(((...((((((.........)))))).))))))))......((((((.-----------------.........)))))))-))).... ( -26.20) >DroEre_CAF1 50055 92 + 1 UCCACUUGUUGCACACACCGAAACACCGAAAGAGCACUAAUUUUCGGUUCGUGUGCUCGUUGUUGGCU-----------------GCUUAGGCUGCCAGCUACAAAAUU ..........(((((((((((((..((....).).......)))))))..))))))..((.((((((.-----------------((....)).)))))).))...... ( -29.70) >DroYak_CAF1 50767 109 + 1 UCCACUUGUUGCACACACCGAAACACCGAAAGAGCACUAAUUUUCGGUUCGUGUGCUCGUUGCUAGCUGUGUGGUGCUGUGCUGUGCUUAGGUUGCCAGCUACAAAAUU .((((..(((((((((((.((...((((((((........))))))))))))))).....))).)))...))))...(((((((.((.......)))))).)))..... ( -31.70) >consensus UCCACUUGUUGCACACACCGAAACACCGAAAGAGCACUAAUUUCGGGUUCGUGUGCUCGUUGUUGGCU_________________GUUUAGGUUGCCAGCG_CAAAAUU ..........((((((...(((...((((((.........)))))).))))))))).....((((((...........................))))))......... (-21.01 = -21.21 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:45 2006