Locus 6738

Sequence ID 3R_DroMel_CAF1
Location 17,758,448 – 17,758,540
Length 92
Max. P 0.998072
window10943

overview

Window 3

Location 17,758,448 – 17,758,540
Length 92
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 82.90
Mean single sequence MFE -27.80
Consensus MFE -23.34
Energy contribution -24.24
Covariance contribution 0.90
Combinations/Pair 1.00
Mean z-score -3.08
Structure conservation index 0.84
SVM decision value 3.00
SVM RNA-class probability 0.998072
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17758448 92 - 27905053
-----UCUGGUUGCUCCUCCAU-UUACCACAUCCCCCC-------------CCCACAUCCGUGCUCCAUGGGUGUGAAAUCUAACGGAAGUGGCCACCCCAUUUCCGGUCC
-----..(((........))).-..(((..........-------------..((((((((((...)))))))))).........((((((((.....))))))))))).. ( -28.50)
>DroSec_CAF1 47075 97 - 1
UUGGGUCUGCUUGCUCCUCCAU-UUCCCACAUUCCCCC-------------CACACAUCCGUGCUCCAUGGGUGUGAAAUCUAACGGAAGUGGCCACCCCAUUUCCGGUCC
.((((.................-..)))).........-------------..((((((((((...))))))))))........(((((((((.....))))))))).... ( -29.91)
>DroSim_CAF1 47515 97 - 1
UUGGGUCUGCUUGCUCCUCCAU-UUCCCACAUCCCCCC-------------CACACAUCCGUGCUCCAUGGGUGUGAAAUCUAACGGAAGUGGCCACCCCAUUUCCGGUCC
.((((.................-..)))).........-------------..((((((((((...))))))))))........(((((((((.....))))))))).... ( -29.91)
>DroEre_CAF1 49830 110 - 1
UCUGGUCUGGUUGCUCCUCCAU-UUCCCAUUUCCCCCUCCCAUUCCCCCGCCACACAUCCGUGCUCCAUGGGUGUGAAAUCUAACGGAAGUGGCCACCCCAUUUCCGGUCC
..(((...((.....)).))).-..........................(((.((((((((((...)))))))))).........((((((((.....))))))))))).. ( -31.10)
>DroYak_CAF1 50555 86 - 1
UCUGGUCUGGUUGCUCCUCCAUAUUCCCACUUACCCCCC--------------CACAUCCG-----------UGUGAAAUCUAACGGAAGUGGCCACCCCAUUUCCGGUCU
..(((...((.....)).)))..................--------------((((....-----------))))........(((((((((.....))))))))).... ( -19.60)
>consensus
UCGGGUCUGGUUGCUCCUCCAU_UUCCCACAUCCCCCC_____________CACACAUCCGUGCUCCAUGGGUGUGAAAUCUAACGGAAGUGGCCACCCCAUUUCCGGUCC
.....................................................((((((((((...))))))))))........(((((((((.....))))))))).... (-23.34 = -24.24 +   0.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:44 2006