Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 17,750,161 – 17,750,259 |
Length | 98 |
Max. P | 0.678096 |
Location | 17,750,161 – 17,750,259 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 92.78 |
Mean single sequence MFE | -29.90 |
Consensus MFE | -22.10 |
Energy contribution | -23.14 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.09 |
Mean z-score | -2.08 |
Structure conservation index | 0.74 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678096 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17750161 98 - 27905053 GCUUUUGGCCAUUUGGAGUGGGAAUCGGGGCUUACUACCAGAAAUUGAGUUGGAUUUAUGCAUGUAAAGCCGGAAAGCAGAAGUUGGACCA-GGGGGAU .(((((((((((((((((((((........)))))).)))))..(((..((((.(((((....))))).))))....)))....))).)))-))))... ( -26.90) >DroSec_CAF1 39102 98 - 1 CCUUUUGGCCAUUUGGAGUGGGAAUCGGGACUUACUACCAGAAAUUGAGUUGGAUUUAUGCAUGUAAAGCCGGAAAGCAGAAGUUGGACCA-GGGGGAG ((((((((((((((((((((((........)))))).)))))..(((..((((.(((((....))))).))))....)))....))).)))-))))).. ( -29.60) >DroSim_CAF1 38928 98 - 1 CCUUUUGGCCAUUUGGAGUUGGAAUCGGGUUUUACUACCAGAAAUUGAGUUGGAUUUAUGCAUGUAAAGCCGGAAAGCAGAAGUUGGACCA-GGGGGAG (((((((((((.((...(((....((.((((((((...((.(((((......))))).))...)))))))).)).)))...)).))).)))-))))).. ( -29.00) >DroEre_CAF1 41487 98 - 1 CCUUUUGGCCAACUGGAGUGGGAUUCAGGUCUUACCACCAGAAAUUGAGUUGGAUUUAUGCAUGUAAAGCCGGAAGGCAGAAGUUGGACAA-GGGGCAA (((((((.((((((.(.(((((((....)))))))).((((........))))...............(((....)))...)))))).)))-))))... ( -31.90) >DroYak_CAF1 41814 99 - 1 CCUUUUGGCCAUCUGGAGUGGGUAUCGGGGCUUACUACCAGAAAUUGAGUUGGAUUUAUGCAUGUAAAGCCGGAAAGCAGAAGUUGGACAAAGGGGGAG (((((((.(((((((((((((((......))))))).)))))..(((..((((.(((((....))))).))))....)))....))).))))))).... ( -32.10) >consensus CCUUUUGGCCAUUUGGAGUGGGAAUCGGGGCUUACUACCAGAAAUUGAGUUGGAUUUAUGCAUGUAAAGCCGGAAAGCAGAAGUUGGACCA_GGGGGAG ((((.((((((((((((((((((......))))))).)))))..(((..((((.(((((....))))).))))....)))....))).))).))))... (-22.10 = -23.14 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:40 2006